Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01274 ATGGCCCTCCTCAAACACCTCCTCCTCTCATTCACCATTATCATCATTTCTTTTGTTGCTTGTTATAGCACCTTGCAAGAGGACCCACCTAGTAGTATTATATATATTGATCATTCACCTTCTATTGATGATGGTAGGACATTCAAGAACTTGATCAAGCAAAGCACAAATGTTTTGAGCCTAAACAGGTTTGACAAGCGTAGTTCGCTTAAAAAGCTTAGTGTCAATGATTATGGAGCTAAGGGGAATGGTGATGCTGATGACACAGAGGCTTTCAAGAAGGCTTGGGATGTAGTATGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTCAGGCTAATTATCTGCTCAAACCAATCAGATTCTCTGGCCCTTGCGAACCTAACGTTGAAGTCCAGATTTCTGGAACCCTTGAAGCATCAGATGATCCATCAGATTACGAGGATGACAGAAGACACTGGCTTGTATTTGACAATGTTAAGAAACTATTTGTTTATGGTGGTGGAACCATTGATGGAAACGGCAAGATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGCGCCCTTGCAAGGATGCCCCAACGGCTCTGACTTTCTATAATTGCGAGGACTTGACAGTTGAGAACTTGAGCATAGAAAATGCTCAACAAATCCATGTTTCATTCCAGGACTCCGTGAATATTAAGGTTTCTGGCCTTACCGTGACCGCACCAGAGGATAGCCCCAACACTGATGGGATTCATGTCACCAATACGCAAAACATCCAAATCTCAAGCTCTGTTATAGGAACTGGTGATGATTGCATATCTATTGTACATGGATCCAAAGATGTAGAAGCCACAGATATTACCTGTGGACCAGGTCATGGTATCAGTATTGGAAGCTTAGGGTCCGGAAAATCCAAGGAATTTGTTTCAGGAATACGAGTGAATAGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGCGACATCCAGTTTCAGAACATTGGAATGGACAATGTGACCAACCCCATAATAATTAAtcagaattattgtgacaaaaaaaagaagccatgcaaaaaaatgCTCTCGAGGAAATCCGCGATCCAAATCAAGAACGTGTTGTACCAGAACATAACGGGCACAAGTGCTTCTGATATAGCTGTGAAGTTTGATTGCAGCGATAAATTTCCATGCGAGGAGATAGTGTTGCAGAACATAGACCTCGAATGTGAAGGAGGAGATGATGCCGAGGCTATGTGTAACAATGTTGAATTGTCTTACTTAGGAAACGTTAGGCCTCGTTGCAACTCAAAAAAGAGAAAGGCATTTACTACTATTACCTCCATATGGAAATACTTCTCATGGTGGAGGAGGTGGAGGTGGGAGCCCTCCATCAATGCAACTTCTACACTTCTTTTCAACCCAACCTTCAATGTCATTCTACCCATTTCCCCCAAAGTGCCTTCCACCACTCAATCTAGCAATCATTCCTGTAATGACACCAGCTATTGTTATCACTGCTATGACCACCACCAGTGTCTCAATTGA 1569 0.4149 MALLKHLLLSFTIIIISFVACYSTLQEDPPSSIIYIDHSPSIDDGRTFKNLIKQSTNVLSLNRFDKRSSLKKLSVNDYGAKGNGDADDTEAFKKAWDVVCSSGEAILVVPQANYLLKPIRFSGPCEPNVEVQISGTLEASDDPSDYEDDRRHWLVFDNVKKLFVYGGGTIDGNGKIWWKNSCKRNKKRPCKDAPTALTFYNCEDLTVENLSIENAQQIHVSFQDSVNIKVSGLTVTAPEDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVHGSKDVEATDITCGPGHGISIGSLGSGKSKEFVSGIRVNRAKIFGTKNGVRIKTWQGGSGSASDIQFQNIGMDNVTNPIIINQNYCDKKKKPCKKMLSRKSAIQIKNVLYQNITGTSASDIAVKFDCSDKFPCEEIVLQNIDLECEGGDDAEAMCNNVELSYLGNVRPRCNSKKRKAFTTITSIWKYFSWWRRWRWEPSINATSTLLFNPTFNVILPISPKVPSTTQSSNHSCNDTSYCYHCYDHHQCLN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01274 522 Pfam Glycosyl hydrolases family 28 106 431 IPR000743 GO:0004650|GO:0005975
Gma03g01274 522 Gene3D - 55 478 IPR012334 -
Gma03g01274 522 SUPERFAMILY Pectin lyase-like 71 476 IPR011050 -
Gma03g01274 522 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gma03g01274 522 PANTHER - 7 448 - -
Gma03g01274 522 SMART pbh1 202 222 IPR006626 -
Gma03g01274 522 SMART pbh1 252 273 IPR006626 -
Gma03g01274 522 SMART pbh1 334 355 IPR006626 -
Gma03g01274 522 SMART pbh1 225 251 IPR006626 -
Gma03g01274 522 SMART pbh1 305 326 IPR006626 -
Gma03g01274 522 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Gma03g01274 522 PANTHER ENDO POLYGALACTURONASE 7 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01274 Gma-Chr3 38811855 38816624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01274 39 444 Glycoside Hydrolase AT2G41850 55.396 1.75e-144 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01274 K01184 - gmx:100817828 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01274 03 38811855 38816624 Gma03g01274 03 38811855 38816624 ECH
Gma19g01325 19 42546723 42549664 Gma03g01274 03 38811855 38816624 GST
Gma02g01718 02 36757458 36761333 Gma03g01274 03 38811855 38816624 PCT