Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01718 ATGGCCCTCCAAAGGCATCACCTCTCGTTACTTTTTATCATGTTTTCTTTTGTTGCTTGTCATAGCACCGTGCTATTTGATGATGGTAGTACGTTCAAGGACTTTATCAAACAAAAGAGTACAGATGTTTTGAGCTTAAAGAAATTTGTCAAGTTGGGTGACATTTCTTCTTCGCTTAAAACGGTTAACGTCAATGATTATGGAGCTCGTGGAGATGGCAAAACTGATGACACTCAGGCATTCAATGACGCTTGGGAAGTAGCATGTTCTTCTGGGGGTGCAGTTCTTCTGGTGCCTGAGAATAATTATCTACTCAAGCCATTCAGATTTTCTGGCCCTTGCAGATCCAACATCGAAGTCCAGATTTCTGGAACCATTGAAGCATCAGAAAACCTATCAGATTACAGCGAAGATCTCACTCACTGGCTTACTTTCGACAGTGTTGAGAAACTATCAGTTAAAGGTGGTGGTACCATCCATGGAAATGGGAACATATGGTGGCAAAACTCATGCAAAGTGAACGAAAAGCTTCCTTGCAAGGATGCCCCTACGGCATTGACTTTCTACAAGTGCAACGATTTGACAGTGGAGGATTTGACGATAAAAAATGGCCAAAAGATGCAAGTTTCATTCCAAGACTCTGAGAATGTTAAAGTTTCCGGTCTCACTGTGACAGCACCGGGGGATAGCCCAAACACTGATGGAATTCATGTCACAAACACCCAAAACATTCAAATCTCAAGCTCCGTTATAGGAACTGGTGATGATTGTATATCGATTGTAAGTGGATCCAAGGATGTACTAGCCACAGACATAACCTGCGGACCAGGCCATGGTATCAGCATCGGAAGCCTAGGGGCTGGGGGATCCAAGGACTTCGTTTCAGGAATAACGGTGAAAGGAGCTATGCTTTCCGGAACTACAAATGGACTAAGAATTAAGACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCCAATTTCAGAACATTCAAATGGACAATGTGACCAACCCCATCATAATAGATCAAAATTATTGTGATCAAGAGACACCATGCGAAGAACAAAAATCCGCTGTTCAGATTAGGAACGTGATGTACCAAAACATAAAGGGCACAAGTGCTTCTGATGTGGGTGTGCAATTTGATTGCAGCAACAACTTTCCATGCCAGGGGATAGTGTTGCAGAACATAGACTTGCAACTTGAAGGTGGAGGAGGGGCCAAGGCTTCATGCAACAGTGTTGAATTGTCCTACAGAGGAGATGTTATCCCTCTCTGCCGATAG 1287 0.4367 MALQRHHLSLLFIMFSFVACHSTVLFDDGSTFKDFIKQKSTDVLSLKKFVKLGDISSSLKTVNVNDYGARGDGKTDDTQAFNDAWEVACSSGGAVLLVPENNYLLKPFRFSGPCRSNIEVQISGTIEASENLSDYSEDLTHWLTFDSVEKLSVKGGGTIHGNGNIWWQNSCKVNEKLPCKDAPTALTFYKCNDLTVEDLTIKNGQKMQVSFQDSENVKVSGLTVTAPGDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVSGSKDVLATDITCGPGHGISIGSLGAGGSKDFVSGITVKGAMLSGTTNGLRIKTWQGGSGSASNIQFQNIQMDNVTNPIIIDQNYCDQETPCEEQKSAVQIRNVMYQNIKGTSASDVGVQFDCSNNFPCQGIVLQNIDLQLEGGGGAKASCNSVELSYRGDVIPLCR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01718 428 Gene3D - 54 422 IPR012334 -
Gma02g01718 428 PANTHER - 12 427 - -
Gma02g01718 428 SMART pbh1 323 344 IPR006626 -
Gma02g01718 428 SMART pbh1 214 240 IPR006626 -
Gma02g01718 428 SMART pbh1 241 262 IPR006626 -
Gma02g01718 428 SMART pbh1 294 315 IPR006626 -
Gma02g01718 428 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Gma02g01718 428 PANTHER ENDO POLYGALACTURONASE 12 427 - -
Gma02g01718 428 Pfam Glycosyl hydrolases family 28 95 416 IPR000743 GO:0004650|GO:0005975
Gma02g01718 428 SUPERFAMILY Pectin lyase-like 59 427 IPR011050 -
Gma02g01718 428 ProSitePatterns Polygalacturonase active site. 271 284 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01718 Gma-Chr2 36757458 36761333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01718 10 427 Glycoside Hydrolase AT2G41850 55.452 6.87e-156 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01718 K01184 - gmx:100816917 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01718 02 36757458 36761333 Gma02g01718 02 36757458 36761333 ECH
Gma02g01718 02 36757458 36761333 Gma19g01325 19 42546723 42549664 PCT
Gma02g01718 02 36757458 36761333 Gma03g01274 03 38811855 38816624 PCT