Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02295 ATGGAAAACTCTGTTTCGTCTCTCTCCACATTCCACACCCAACATTTTTCAATGGACCAACGCGGCATTCCCGTCGACGCCACCACTTTCTCTTCGGTCATCGCCGCGTGCATTCGCACCAAGTCACTGCCCCAAGGAAAGGAAGTTCACACCCACATCAGAATCAATGGACTCGAAAACAACGCTTTCTTACGGACAAAGCTTGTTCACATGTACACGGCATGTGGGTCGTTGGAAGATGCACAGAAACTGTTTGATGGATTGCCCTGTGAGAGCGTGTACCCGTGGAATGCTCTGCTCAGAGGGACTGTGGTTTCGGGGAAAAGACGGTACATTGATGTGCTCAAGACTTATACTGAGATGAGGGCATTGGGGGTTGAGTTGAATGTGTATAGTTTCTCTAATGTGATTAAGAGCTTTGCCGGTGCAACAGCATTTTTGCAAGGATTGAAGACTCATGGGCTTCTGATCAAGAATGGATTGGTGGATAACTACATTCTTAGAACCAGTTTTATTGATAAGTACTTCAAGTGTGGGAAAGTTATGCTTGCGTGCCGGGTGTTTGAGGAGATTCCCGAGAGGGATATTGTTGTGTGGGGTGCGATGCTTGCTGGGTTTGCGCACAATAGGTTGCAGAGGGAGGTGTTGGAGTATGTGAGGTGGATGGTGGAGGAGGGAGTGAAGCTGAGTTCGGTTGTGATGACTATTGTTATTCCTGTGATCTGGGAGGTTTGTCTGAGGAGGTTGGGTCAGGAGTTTCATGCTTATGTTGTGAAAACGAAGTCATACTCTAAGCTGGTGCCAGTTCAGTCTGCTTTGATTGATATGTATTGCAAGTGTGGGGATATGATTTCGGCAAGACAGGTTTTTTATGGTTCGAAGGAGAGGAATGTGGTTTGTTGGACGGCTCTGATGGCAGGGTATGCTGTGAATGGGAAACTAAAGCAGGCACTGAGGTCCACGATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTGGTGACACTTGCCACTGTTCTTCCAGTTCGTGCACAGTTGAGGGCTTTGGAACAAGGGAAGCAGATTCATGCTTATGCTTTGAAACATTGGTTTCTGCCTAGTGTGTCTGTAACTTCTTCATTGATGACAATGTACTCTAAGTGTGGTGTTTTTGAGTATTCTAGAAGATTATTTGATAATATGGAACAAAGGAATGTGATTTCATGGACCGCCATGATTGATTCTTATATTGAAAATGGATATCTGTGTGAAGCACTTGGTGTGATTAGGTCAATGCAATTGTCAAAGCATAGGCCTGACTCTGTTGCTATAAGAAGGATGTTGAGTGTTTGTGGTGAACTAAACTTTTTCGACTTTGAAGCCCTATCTGCCGCGACGCGACTTCCTCCGACTAGGCAACCAGAGTGCTTATAA 1413 0.4572 MENSVSSLSTFHTQHFSMDQRGIPVDATTFSSVIAACIRTKSLPQGKEVHTHIRINGLENNAFLRTKLVHMYTACGSLEDAQKLFDGLPCESVYPWNALLRGTVVSGKRRYIDVLKTYTEMRALGVELNVYSFSNVIKSFAGATAFLQGLKTHGLLIKNGLVDNYILRTSFIDKYFKCGKVMLACRVFEEIPERDIVVWGAMLAGFAHNRLQREVLEYVRWMVEEGVKLSSVVMTIVIPVIWEVCLRRLGQEFHAYVVKTKSYSKLVPVQSALIDMYCKCGDMISARQVFYGSKERNVVCWTALMAGYAVNGKLKQALRSTIWMQQEGFRPDVVTLATVLPVRAQLRALEQGKQIHAYALKHWFLPSVSVTSSLMTMYSKCGVFEYSRRLFDNMEQRNVISWTAMIDSYIENGYLCEALGVIRSMQLSKHRPDSVAIRRMLSVCGELNFFDFEALSAATRLPPTRQPECL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02295 470 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 18 449 - -
Gma18g02295 470 Pfam PPR repeat family 296 340 IPR002885 -
Gma18g02295 470 Gene3D Tetratricopeptide repeat domain 263 345 IPR011990 GO:0005515
Gma18g02295 470 Gene3D Tetratricopeptide repeat domain 7 106 IPR011990 GO:0005515
Gma18g02295 470 Gene3D Tetratricopeptide repeat domain 107 262 IPR011990 GO:0005515
Gma18g02295 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Gma18g02295 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Gma18g02295 470 TIGRFAM PPR: pentatricopeptide repeat domain 400 434 IPR002885 -
Gma18g02295 470 PANTHER OS07G0578800 PROTEIN-RELATED 18 449 IPR045215 GO:0003723|GO:0009451
Gma18g02295 470 Gene3D Tetratricopeptide repeat domain 346 449 IPR011990 GO:0005515
Gma18g02295 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Gma18g02295 470 Pfam PPR repeat 372 399 IPR002885 -
Gma18g02295 470 Pfam PPR repeat 400 426 IPR002885 -
Gma18g02295 470 Pfam PPR repeat 169 196 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02295 Gma-Chr18 56640730 56644581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02295 22 447 Glycoside Hydrolase AT3G49170 24.480 1.61e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02295 - - gmx:100809249 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02295 18 56640730 56644581 Gma09g02237 09 47959806 47963692 GST
Gma03g01021 03 34236666 34239570 Gma18g02295 18 56640730 56644581 PCT