Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02237 ATGGAAAACTCTGTTTCATCTCTCTCACTATGTTTCCCTCCAAACCCCAAAACCCACATTTTCCAAGCTTTCAGCTTTAGACCCTCCCCACGATCCCCACCACCACCCTCCAAAACCCACCACACAAAACCTCCCAGATTCACCACCCCCAGAAAGCACAGAACCAAAAAGCCAAAACCCTTCACCGAAAAAGACGCGTTTCCGAGCTCCCTACCCCTCCACAACAAAAACCCAATCTTCATCTTCAAAGACATCAAACGCTTCGCTCGCCAGAACAAGCTCAAGGAGGCTCTCACCATCTTGGACTACGTTGACCAGCGCGGCATCCCCGTCGACGCCACCACTTTCTCTTCTGTCGTCGCCGCGTGCATTCGTGCCAAGTCACTGCCACAAGGAAGGGAAGTTCACACCCACATCAGAATCAATGGACTCGAAAACAACTCTTTCTTGCGGACAAAGCTTGTTCACATGTACACCGCATGTGGGTCGTTGGAAGATGCGCAGAAGCTGTTTGATGGATTGCCCTGCGAGAGCGTGTACCCGTGGAACGCTTTGCTCAGAGGGACTGTGGTTTCTGGGAAGAGACAGTACATTGATGTGCTCAAGACTTATACTGAGATGAGGGCATTGGGGGTTGAGTTGAATGTGTATAGTTTCTCTAATGTGATTAAGAGTTTCGCTGGCGCGAGAGCATTTTCGCAAGGATTGAAGACTCATGGACTTTTGATTAAAAATGGATTGGTGGATAACTACATTCTTAGGACCAGTTTGATTGATATGTACTTCAAGTGTGGGAAGGTTAGGCTCGCGTGCCGGGTGTTTGAGGAAATTCCCGAGAGGGATGTTGTTGTGTGGGGGGCGATGCTTGCTGGGTTTGCGCACAATAGGTTGCAGAGGGAGGTGTTGGAGTATGTGAGGTGGATGGTGGAGGAGGGAGTGAAGCCAAATTCGGTTGTGATGACGATTGTTATTCCTGTGATCGGGGAGGTTTGTGCGAGGAGGTTGGGTCAGGAGTTTCATGCTTATGTTGTGAAAACTAAATCGTACTCTAAGCTGGTGCCCGTTCAGTcttctttgattgatatgtattgcaagtgtggggatatgatttcggcgagacgggttttttatggttcaaaggagaggaatgtggtttgttggactgctctgatGTCGGGGTATGCTGCGAATGGGAAACTAGAGCAGGCGCTGAGGTCCACGATTTGGATGCAgcaagaagggttcaggcctgatgtggtgacacttgccactgttcttccggtttgtgcacagttgagggctttggaacaagggaagcagattcatgcgtatgctttgaaacattggtttctgcctaatgtgtctgtagcttcttcattgatgacgatgtactccaagtgtggtgttgttgaGTATTCTAGAAGGTTATTTGATAATATGGAACAAAGGAATGTGATTTCATGGACCGCCATGATTGATTCGTATATTGAAAATGGGTATCTGTGTGAAGCACTTGGTGTGATTAGGTCAATGCAATTGTCAAAGCACAGGCCAGACTCTGTTGCTATTGGAAGGATGTTGAGTGTTTGTGGTGAACGAAAACTTGTGAAGCTTGGGAAGGAGATTCATGGGCAGATATTGAAAAGGGACTTTACATCAGTCCATTTTGTTTCTGCAGAACTTATCAATATGTATGGTTTCTTTGGAGATATTAATAAGGCCAATTTGGTGTTTAATGCAGTTCCAGTTAAAGGTTCTATGACATGGACTGCTCTTATTAGGGCCTATGGATATAATGAATTGTATCAAGATGCAGTTAACCTTTTTGATCAAATGAGATATTCTCCAAACCACTTTACCTTTGAAGCCATTCTATCTATATGTGACAAAGCTGGATTTGTTGATGATGCTTGTAGAATCTTCAATTCAATGCCTAGATATAAAATTGAAGCATCTAAGGAACACTTCGCTATTATGGTGACCCTTATTCCTATACGCCGTCGTTTCTCTGTTTCGACTTTGAAGCCCTATCTGCCGCAACGCGACGCGACTTCCTCCGACGACGCGAGCCGAGTGCTCATAAAAGGAATAGTAGTAAGCACATTCATCTCCCCTAGATATGAACTCAGTTGCAAGGCGTTTATCAAGATTATTCAGACATTCAGGTTTCACGCCTGA 2178 0.3976 MENSVSSLSLCFPPNPKTHIFQAFSFRPSPRSPPPPSKTHHTKPPRFTTPRKHRTKKPKPFTEKDAFPSSLPLHNKNPIFIFKDIKRFARQNKLKEALTILDYVDQRGIPVDATTFSSVVAACIRAKSLPQGREVHTHIRINGLENNSFLRTKLVHMYTACGSLEDAQKLFDGLPCESVYPWNALLRGTVVSGKRQYIDVLKTYTEMRALGVELNVYSFSNVIKSFAGARAFSQGLKTHGLLIKNGLVDNYILRTSLIDMYFKCGKVRLACRVFEEIPERDVVVWGAMLAGFAHNRLQREVLEYVRWMVEEGVKPNSVVMTIVIPVIGEVCARRLGQEFHAYVVKTKSYSKLVPVQSSLIDMYCKCGDMISARRVFYGSKERNVVCWTALMSGYAANGKLEQALRSTIWMQQEGFRPDVVTLATVLPVCAQLRALEQGKQIHAYALKHWFLPNVSVASSLMTMYSKCGVVEYSRRLFDNMEQRNVISWTAMIDSYIENGYLCEALGVIRSMQLSKHRPDSVAIGRMLSVCGERKLVKLGKEIHGQILKRDFTSVHFVSAELINMYGFFGDINKANLVFNAVPVKGSMTWTALIRAYGYNELYQDAVNLFDQMRYSPNHFTFEAILSICDKAGFVDDACRIFNSMPRYKIEASKEHFAIMVTLIPIRRRFSVSTLKPYLPQRDATSSDDASRVLIKGIVVSTFISPRYELSCKAFIKIIQTFRFHA 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02237 725 Pfam PPR repeat family 382 429 IPR002885 -
Gma09g02237 725 MobiDBLite consensus disorder prediction 22 70 - -
Gma09g02237 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 617 651 IPR002885 -
Gma09g02237 725 PANTHER OS07G0578800 PROTEIN-RELATED 31 666 IPR045215 GO:0003723|GO:0009451
Gma09g02237 725 Gene3D Tetratricopeptide repeat domain 556 663 IPR011990 GO:0005515
Gma09g02237 725 Gene3D Tetratricopeptide repeat domain 81 194 IPR011990 GO:0005515
Gma09g02237 725 Gene3D Tetratricopeptide repeat domain 398 551 IPR011990 GO:0005515
Gma09g02237 725 Gene3D Tetratricopeptide repeat domain 195 353 IPR011990 GO:0005515
Gma09g02237 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Gma09g02237 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Gma09g02237 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 31 666 - -
Gma09g02237 725 Pfam PPR repeat 458 485 IPR002885 -
Gma09g02237 725 Pfam PPR repeat 486 512 IPR002885 -
Gma09g02237 725 Pfam PPR repeat 588 613 IPR002885 -
Gma09g02237 725 Pfam PPR repeat 255 281 IPR002885 -
Gma09g02237 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Gma09g02237 725 MobiDBLite consensus disorder prediction 44 58 - -
Gma09g02237 725 TIGRFAM PPR: pentatricopeptide repeat domain 486 520 IPR002885 -
Gma09g02237 725 TIGRFAM PPR: pentatricopeptide repeat domain 255 283 IPR002885 -
Gma09g02237 725 TIGRFAM PPR: pentatricopeptide repeat domain 588 613 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02237 Gma-Chr9 47959806 47963692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02237 85 663 Glycoside Hydrolase AT3G49170 28.571 5.80e-71 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02237 - - gmx:100809249 1269.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02295 18 56640730 56644581 Gma09g02237 09 47959806 47963692 GST
Gma03g01021 03 34236666 34239570 Gma09g02237 09 47959806 47963692 PCT