LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g01237	ATGGCTGATGAGAGCGTCGTTGAGTCCCCAGTGAAGAGGCAGAGAGATGATGATGAAGAAAATGAGGTCTCTGTTTCCATGGATGTGGAGGGTGGCAAAGACCCTCTTAGTAACGGTTTATCATCTGTGATTCCTGGGTGGTTCTCTGAAATTAGTTCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGAATACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTAGATGGAGTAATTCAGCTAACAGAAAGGGATGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATCGGTGGAGGTGATGGAGGGGTCATACGAGAAGTAGCACACCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAAGATGGTTGTTGATGTCTCCAAACAATACTTCCCTGATGTAGCTGTTGGGTATGATGATCCTCGTGTGACACTTCATATTGGTGATGGAGTTGCATTTCTGAAGGAAGTTCCTGAAGGAACTTATGATGCTGTTATAGTGGATTCATCCGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTCTTTTCGTCAGTTGCAAAGGCTCTTCGTCCAGGTGGAGTTGTGTGCACTCAGGCAGAAAGCATATGGCTTCATATGGATATAATTGAGGACATTGTGGCTAATTGTCGCCAGATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACTGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAATGAGAGTCAGAAGTCAGTAAGACCGCTGAAATTTTACAACTCTGAGATTCATACCGCAGCTTTCTGCTTGCCGTCGTTTGCGAAGAGGAAGATTGGTTCTAAAGCAAATTAA	1008	0.4296	MADESVVESPVKRQRDDDEENEVSVSMDVEGGKDPLSNGLSSVIPGWFSEISSMWPGEAHSLKVEKILFQGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVIREVAHHSSVEKIDICEIDKMVVDVSKQYFPDVAVGYDDPRVTLHIGDGVAFLKEVPEGTYDAVIVDSSDPIGPAQELFEKPFFSSVAKALRPGGVVCTQAESIWLHMDIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENESQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSKAN	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g01237	335	ProSiteProfiles	Polyamine biosynthesis (PABS) domain profile.	45	282	IPR030374	-
	Gma18g01237	335	MobiDBLite	consensus disorder prediction	1	20	-	-
	Gma18g01237	335	PANTHER	SPERMIDINE SYNTHASE-RELATED	1	335	-	-
	Gma18g01237	335	Gene3D	Vaccinia Virus protein VP39	98	335	IPR029063	-
	Gma18g01237	335	TIGRFAM	speE: spermidine synthase	47	325	IPR001045	GO:0003824
	Gma18g01237	335	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	43	330	IPR029063	-
	Gma18g01237	335	ProSitePatterns	Polyamine biosynthesis (PABS) domain signature.	124	137	IPR030373	-
	Gma18g01237	335	Pfam	Spermine/spermidine synthase domain	103	290	-	-
	Gma18g01237	335	MobiDBLite	consensus disorder prediction	1	36	-	-
	Gma18g01237	335	PIRSF	Spermidine_synth	37	335	IPR030668	GO:0006595
	Gma18g01237	335	Hamap	Polyamine aminopropyltransferase [speE].	46	331	IPR001045	GO:0003824
	Gma18g01237	335	CDD	AdoMet_MTases	145	234	-	-
	Gma18g01237	335	Gene3D	Spermidine synthase, tetramerisation domain	39	97	IPR037163	-
	Gma18g01237	335	Pfam	Spermidine synthase tetramerisation domain	46	100	IPR035246	-
	Gma18g01237	335	PANTHER	SPERMIDINE/SPERMINE SYNTHASE	1	335	IPR001045	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g01237	Gma-Chr18	20045556	20050043	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g01237	K00797		-	gmx:100776863	671.774

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma18g01237	18	20045556	20050043	Gma18g01237	18	20045556	20050043	ECH
	Gma01g00295	01	3347722	3350900	Gma18g01237	18	20045556	20050043	PCT
	Gma02g00301	02	3164309	3167466	Gma18g01237	18	20045556	20050043	PCT
	Gma18g01237	18	20045556	20050043	Gma01g00295	01	3347722	3350900	PCT
	Gma18g01237	18	20045556	20050043	Gma02g00301	02	3164309	3167466	PCT