Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00295 ATGGCTGCGGAAAACGTTGTTGAGTTCACAGACTTACCCGTCAAGAGGCCAAGAGAAGAAGAAGAAGGAACCAATGGCGTCTCCAACGACGCCGTTTCAGCGCTCCCCAATGACCCTCAATACCCTGGCATCTCTGCGGTTATTCCCGGTTGGTTCTCCGAAATCAGCCCAATGTGGCCCGGGGAGGCACATTCCTTGAAGATGGAAAAGATTTTGTTTCAAGGGAAGTCTGACTATCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAAGTTCTTGTTTTGGATGGAGTCATTCAGCTTACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTGCTGCGGGAAGTAGCTCGCCATGCCTCAGTAGAGAAGATAGACATCTGCGAAATAGACAAGATGGTTGTTGATGTCTCCAAACAATTTTTCCCCGATATAGCAGTAGGTTTTGAGGACCCTCGTGTAACACTTACTGTTGGTGATGGAGTTGCATTTTTGAAGGATGTTCCAGAAGGAACTTACGATGCAGTTATAGTGGATTCATCTGACCCTATTGGTCCTGCTCAAGAGCTGTTTGAAAAGCCCTTTTTTGCGTCCGTTGCAAAGGCTCTCCGTCCAGGAGGTGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCATATGCACATCATTGAGGACATTGTGGCTAATTGTCGCCAAATATTCAAAGGTTCTGTCAACTATGCATGGACCACAGTTCCTACATATCCTAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGTCCTCTTGTTGATTTCAAGCATCCAGTGAATCCTTTAAGTGAGAATGATAGTCAACAGTCAAGACCATTGAAATTTTACAATTCTGAGATTCATACAGCGGCTTTCTGTTTGCCATCTTTTGCTAAGAGGAAGATTGGTTCTAAAACAAATTGA 1017 0.4435 MAAENVVEFTDLPVKRPREEEEGTNGVSNDAVSALPNDPQYPGISAVIPGWFSEISPMWPGEAHSLKMEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLTVGDGVAFLKDVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPLSENDSQQSRPLKFYNSEIHTAAFCLPSFAKRKIGSKTN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00295 338 Pfam Spermidine synthase tetramerisation domain 50 104 IPR035246 -
Gma01g00295 338 CDD AdoMet_MTases 127 238 - -
Gma01g00295 338 PIRSF Spermidine_synth 40 338 IPR030668 GO:0006595
Gma01g00295 338 Pfam Spermine/spermidine synthase domain 107 294 - -
Gma01g00295 338 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 338 IPR001045 GO:0003824
Gma01g00295 338 TIGRFAM speE: spermidine synthase 51 328 IPR001045 GO:0003824
Gma01g00295 338 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Gma01g00295 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 286 IPR030374 -
Gma01g00295 338 MobiDBLite consensus disorder prediction 11 25 - -
Gma01g00295 338 Gene3D Vaccinia Virus protein VP39 102 338 IPR029063 -
Gma01g00295 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 333 IPR029063 -
Gma01g00295 338 PANTHER SPERMIDINE SYNTHASE-RELATED 1 338 - -
Gma01g00295 338 Hamap Polyamine aminopropyltransferase [speE]. 50 334 IPR001045 GO:0003824
Gma01g00295 338 Gene3D Spermidine synthase, tetramerisation domain 43 101 IPR037163 -
Gma01g00295 338 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00295 Gma-Chr1 3347722 3350900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00295 K00797 - gmx:100790506 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00295 01 3347722 3350900 Gma01g00295 01 3347722 3350900 ECH
Gma01g00295 01 3347722 3350900 Gma02g00301 02 3164309 3167466 GST
Gma01g00295 01 3347722 3350900 Gma18g01237 18 20045556 20050043 PCT
Gma18g01237 18 20045556 20050043 Gma01g00295 01 3347722 3350900 PCT