Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00301 ATGGCTGCGGAAAACGTTGTAGAGTTCACAGACTTACCCGTCAAGAGACCTAGagaagaagaagaagaagaagaagaaCAAACCAATGGAGTCTCCAACGACGCCGTTTCAACGCTACCCAATGACCCTCAATACCCTGGTATCTCTGCTGTTATTCCCGGTTGGTTCTCAGAAATCAGCCCAATGTGGCCTGGGGAGGCGCACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGGAAGTCTGACTATCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTTCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGGGAAGTAGCTCGTCATGCCTCAGTAGAGAAGATAGACATTTGTGAAATAGACAAGATGGTTGTCGATGTCTCTAAACAATTTTTCCCTGATATAGCAGTAGGTTTTGAGGACCCACGTGTAACACTTACTGTTGGTGATGGAGTTGCATTCTTGAAGAATGTTCCAGAAGGAACTTACGATGCAGTTATAGTGGATTCGTCCGACCCTATTGGCCCTGCTCAAGAGCTGTTTGAAAAACCCTTTTTTGCGTCCGTGGCAAAGGCTCTTCGTCCTGGAGGAGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCATATGCACATCATTGAGGACATTGTGGCTAATTGTCGCCAAATATTCAAAGGTTCTATCAACTATGCATGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGTCCTCTTGTTGATTTCAAGCATCCAGTGAATCCTATAAATGAGAATGATAGTCAGCAATCAAGACCATTGAAATTTTACAACTCTGAGATTCATACAGCGGCTTTCTGCTTGCCATCTTTTGCTAAGAGGAAGATTGGTTCTAAAACAAATTGA 1029 0.4295 MAAENVVEFTDLPVKRPREEEEEEEEQTNGVSNDAVSTLPNDPQYPGISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHASVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLTVGDGVAFLKNVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSINYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPINENDSQQSRPLKFYNSEIHTAAFCLPSFAKRKIGSKTN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00301 342 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 290 IPR030374 -
Gma02g00301 342 PIRSF Spermidine_synth 44 342 IPR030668 GO:0006595
Gma02g00301 342 Gene3D Vaccinia Virus protein VP39 106 342 IPR029063 -
Gma02g00301 342 CDD AdoMet_MTases 131 242 - -
Gma02g00301 342 PANTHER SPERMIDINE SYNTHASE-RELATED 1 342 - -
Gma02g00301 342 Gene3D Spermidine synthase, tetramerisation domain 47 105 IPR037163 -
Gma02g00301 342 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 342 IPR001045 GO:0003824
Gma02g00301 342 TIGRFAM speE: spermidine synthase 55 332 IPR001045 GO:0003824
Gma02g00301 342 Pfam Spermidine synthase tetramerisation domain 54 108 IPR035246 -
Gma02g00301 342 Pfam Spermine/spermidine synthase domain 111 298 - -
Gma02g00301 342 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 132 145 IPR030373 -
Gma02g00301 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 337 IPR029063 -
Gma02g00301 342 MobiDBLite consensus disorder prediction 1 39 - -
Gma02g00301 342 Hamap Polyamine aminopropyltransferase [speE]. 54 338 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00301 Gma-Chr2 3164309 3167466 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00301 K00797 - gmx:100792107 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00301 02 3164309 3167466 Gma02g00301 02 3164309 3167466 ECH
Gma01g00295 01 3347722 3350900 Gma02g00301 02 3164309 3167466 GST
Gma02g00301 02 3164309 3167466 Gma18g01237 18 20045556 20050043 PCT
Gma18g01237 18 20045556 20050043 Gma02g00301 02 3164309 3167466 PCT