LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g01225	ATGGCTCATGATCTTGCGCCAGAGGTTGAGAGATTGCTGCATTTTCGAGATCCAAATATTCGGAAGAAGGCAGCATTGTGCTCTGCAAGAATCATAAAGAAAGTTCCAGACTCGGCAGAAAATTTTGTCAATCCTGCTACTGCCTTACTAAGGGAGAAGCACCATGGAGTTATGATTACTGGGGTTCAGCTTTGTACAGAGCTGTGCAAAATTAGCTCAGAAGCTCTTGAACATGTTAGAAAGGCGAGCGACCTTTGGAAGAATATTATGAGAATCAGGGAAATAATCGTTCAGTGCAAAGGGAACCTTGTGTTGGAGTTGCAGCAAAGATCCATAGAATTCAATTTGATTATTGCAAAGCATCAAAATATCAGGCATACACTTGTAGAGAGGATGCCAGTTTTGGATGAGGCAACTTTCCTTGCTAGGAGGGCTGGATCTTTACCAGATGTAGCTTTAACATCGACAGGACCTTCAGTTGGTCTTCCAAATGGAGCAGGCAAACCTGTGGCTCCTATTGTAGATCTTCTTGATATAAATTCAGATGATGCCCCTGTACCAACCTCTTCTGGTGGCGATCTTCTTCAGGACCTTCTTGGAGTTGATCTGTCACTGGCATCACAACAGTCTGGCGCTAGTCAACCTTCAAGAAATGGCACAGATGTTCTTTTGGATCTATTATCTATTGGATCAGTTTCTGCATCTATTGAATCACCTGTACAAAGAAACTCATCTACAATAGACATTGTCCCCCAAACCAAATCAACAGAAAACGCTGGAGCTGCTCCCTCAATGGATTTGCTAGATGGATTTTCCCCCAGCCCACCAACAGAAGAAAACAATGAACTGGTTTATCCATCTATAACTGCATTTGAGAGTAGCTCCTTGAGGTTGGTGTTCAATTTCTCAAAACAGCCTGGAAACTCGCAAACAACCAATATTCAGGCCACCTTTACAAATTTGACCATAAATGTATATACAGATTTTGTTTTTCAGGCAGCAGTCCCAAAGTTTCTGCAGTTGCACTTAGACCCAGCTGGCGGCAATACTCTCCCTACTAGTGGAAAGGGGTCCATCACACAAAACATGAAAGTTACTAATAGCCAACATGGAAAGAAATCTCTTGTCATGCGCATAAAGATAGCATACAAGATAAATGGCAAAGAGACACAGGAAGAAGGACAAATTAATAATTTTCCTCGTGATTTATGCGGCCAGTTGGTCAGTGGTCTATCTAGTTATGCACGAAGCCCTATATATTTTCCGCACTTTATAATCGCTTGTTCAATATTCATGATCCAATCTTTCACATGA	1314	0.4178	MAHDLAPEVERLLHFRDPNIRKKAALCSARIIKKVPDSAENFVNPATALLREKHHGVMITGVQLCTELCKISSEALEHVRKASDLWKNIMRIREIIVQCKGNLVLELQQRSIEFNLIIAKHQNIRHTLVERMPVLDEATFLARRAGSLPDVALTSTGPSVGLPNGAGKPVAPIVDLLDINSDDAPVPTSSGGDLLQDLLGVDLSLASQQSGASQPSRNGTDVLLDLLSIGSVSASIESPVQRNSSTIDIVPQTKSTENAGAAPSMDLLDGFSPSPPTEENNELVYPSITAFESSSLRLVFNFSKQPGNSQTTNIQATFTNLTINVYTDFVFQAAVPKFLQLHLDPAGGNTLPTSGKGSITQNMKVTNSQHGKKSLVMRIKIAYKINGKETQEEGQINNFPRDLCGQLVSGLSSYARSPIYFPHFIIACSIFMIQSFT	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g01225	437	ProSiteProfiles	Gamma-adaptin ear (GAE) domain profile.	283	400	IPR008153	-
	Gma18g01225	437	SUPERFAMILY	Clathrin adaptor appendage domain	259	403	IPR013041	-
	Gma18g01225	437	Gene3D	-	1	111	IPR011989	-
	Gma18g01225	437	Pfam	Adaptin C-terminal domain	286	400	IPR008152	GO:0006886\|GO:0016192
	Gma18g01225	437	Gene3D	-	261	404	-	-
	Gma18g01225	437	PANTHER	AP-1 COMPLEX SUBUNIT GAMMA	90	403	-	-
	Gma18g01225	437	PANTHER	AP-1 COMPLEX SUBUNIT GAMMA	1	91	-	-
	Gma18g01225	437	SMART	alpha_adaptinc2	280	400	IPR008152	GO:0006886\|GO:0016192
	Gma18g01225	437	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	90	403	-	-
	Gma18g01225	437	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	1	91	-	-
	Gma18g01225	437	SUPERFAMILY	ARM repeat	1	77	IPR016024	-
	Gma18g01225	437	Pfam	Adaptin N terminal region	1	90	IPR002553	GO:0006886\|GO:0016192\|GO:0030117

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g01225	Gma-Chr18	19569222	19582185	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g01225	K12391		-	gmx:100817075	509.22

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma01g00299	01	3425593	3438558	Gma18g01225	18	19569222	19582185	PCT
	Gma02g00296	02	3094065	3106095	Gma18g01225	18	19569222	19582185	PCT
	Gma18g01225	18	19569222	19582185	Gma01g00299	01	3425593	3438558	PCT
	Gma18g01225	18	19569222	19582185	Gma02g00296	02	3094065	3106095	PCT