Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00299 ATGAACCCGTTCTCTTCAGGAACGCGTTTGAGGGACATGATTCGGGCCATACGTGCTTGTAAGACTGCAGCAGAAGAACGAGCTGTTGTAAGAAAAGAATGTGCTGCCATTCGTGCTGCAATAAATGAAAATGATAATGACTATAGGCATCGAAACCTGGCTAAGCTAATGTTCATCCACATGCTTGGTTACCCCACACATTTTGGTCAAATGGAATGCCTCAAGTTGATAGCATCTCCTGGATTTCCAGAGAAGAGAATAGGCTATCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAAGTTCTAATGTTGGTCACCAATTCTTTGAAACAAGATCTTAATCACACAAATCAGTATATAGTGGGACTTGCTCTTTGTGCTTTAGGAAACATTTGTTCAGCAGAAATGGCTCGTGATCTTGCACCAGAGGTTGAGAGATTGCTTCAATTTCGAGATCCAAATATTCGGAAGAAGGCAGCATTATGCTCTATAAGGATCATAAAGAAAGTTCCAGACTTGGCAGAAAATTTTATCAACCCTGCTACTTCCTTACTCAGGGAGAAGCATCATGGGGTTCTGATCACTGGGGTTCAGCTTTGTACAGATCTGTGTAAAATTAGCACTGAAGCTCTTGAACATATTAGGAAGAAATGCACAGATGGTTTGGTCAGAACTCTTAAGGATCTAGCCAATAGTCCATATTCACCAGAGTATGATATTGCCGGTATCACAGACCCATTTCTCCACATCAGATTGCTTAAACTTTTGCGAGTGTTGGGTGAAGGCAATGCTGATGCTAGTGACACCATGAATGACATACTTGCCCAGGTGGCTACAAAGACTGAGTCAAATAAAGTTGCAGGGAATGCCATTTTATATGAATGTGTTCAAACAATAATGAGCATTGAAGATAATGGTGGCTTACGTGTACTTGCCATTAATATCCTGGGAAGATTTTTGTCAAATCGTGACAACAATATCAGATATGTGGCATTAAACATGCTAATGAAGGCTGTAACTGCTGATGCTCAGGCAGTACAGAGGCACCGTGCAACAATTATAGAATGTGTGAAGGATTCAGATGCTTCGATTCAGAAAAGAGCCCTTGAACTTGTTTATGTTTTGGTGAATGAAACTAATGTGAAGCCCTTGGCAAAAGAGCTTATAGATTATCTGGAAGTCAGTGATCTTGATTTCAGAGGGGACCTTATTGCCAAAATTTGCTCCATTGTAGCAAAGTATTCCCCAGAGAAGATCTGGTATATTGATCAGATGCTCAAGGTTCTGTCTCAGGCTGGAAATTTTGTAAAAGATGAAGTATGGTATGCCTTAATTGTTGTGATAACCAATGCTTCTGAGCTTCATGGATATACAGTACGAGCATTATACAGAGCATTTCAAATGTCAGCTGAACAGGAGACTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTTAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAGTGACTGAGTTCGATGCAGTTGATGTCGTAGAGATTGCTATAAAACGCCATGCATCAGATCTTACCACAAAATCGATGGCTTTGGTTGCACTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGAGAGGATCAAAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATTGCAGCAGAGAGCTATTGAATTCAATTCGATTATTGCAAAGCATCAAAATATTAGGTCTACACTTGTAGAAAGGATGCCAGTTTTGGATGAGGCAACTTCCATTGGTAGGAGGGCTGGGTCTCTACCAGGTGCAGCTTCAACTCCAACTGCACCTTCATTTAATCTTCCAAATGGAACAGCCAAACCTGTGGCTCCTCTTGTAGATCTACTTGATCTAAGTTCAGATGATGCTCCTGCACCTAGCTCTTCTAGTGGAGGAGATATTCTTCAGGACCTTCTTGGTGTTGATCTTTCACCAGCATCACAACAATCTGTTGCTGGCCAAGCTTCAAAAAGTGGCAACGATGTTCTTTTGGATCTTTTGTCTATTGGATCACCTTCTGTCGAAAGCAGCTCATCTACAGTAGACATCTTATCCTCCAATTCGAGTAACAAAGCACCAGTTTCCTCGTTGGATGGTCTCTCATCTCTTTCACTTTCTACAAAAACAACTTCAAATGCTGCTCCTATGATGGATTTATTGGATGGATTTGCCCCCATCCCGCCAACAGAAAACAATGGACCGGTTTATCCATCTGTAACTGCATTTGAGAGCAGCTCCTTGAGGTTGACATTCAATTTCTCAAAACAACCAGGAAACCCACAAACAACAGTTATCCAGGCTACTTTTATGAATTTGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAGTTTCTTCAGTTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAGAAATCTCTTGTCATGCGTATAAGGATTGCATACAAGATAAATGGCAAGGATACACTGGAGGAAGGACAAGTTAATAATTTTCCTCGTGGTTTATGA 2616 0.409 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRAAINENDNDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINPATSLLREKHHGVLITGVQLCTDLCKISTEALEHIRKKCTDGLVRTLKDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGNADASDTMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAVTADAQAVQRHRATIIECVKDSDASIQKRALELVYVLVNETNVKPLAKELIDYLEVSDLDFRGDLIAKICSIVAKYSPEKIWYIDQMLKVLSQAGNFVKDEVWYALIVVITNASELHGYTVRALYRAFQMSAEQETLVRVTVWCIGEYGDMLVNNVGMLDIEDPITVTEFDAVDVVEIAIKRHASDLTTKSMALVALLKLSSRFPSCSERIKEIIVQFKGSFVLELQQRAIEFNSIIAKHQNIRSTLVERMPVLDEATSIGRRAGSLPGAASTPTAPSFNLPNGTAKPVAPLVDLLDLSSDDAPAPSSSSGGDILQDLLGVDLSPASQQSVAGQASKSGNDVLLDLLSIGSPSVESSSSTVDILSSNSSNKAPVSSLDGLSSLSLSTKTTSNAAPMMDLLDGFAPIPPTENNGPVYPSVTAFESSSLRLTFNFSKQPGNPQTTVIQATFMNLSSNTYTDFVFQAAVPKFLQLHLDPASSNTLPANGSITQSLKITNSQHGKKSLVMRIRIAYKINGKDTLEEGQVNNFPRGL 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00299 871 Gene3D - 730 869 - -
Gma01g00299 871 SUPERFAMILY ARM repeat 25 593 IPR016024 -
Gma01g00299 871 PIRSF AP1_gamma 6 871 IPR017107 GO:0005794|GO:0016192|GO:0030121
Gma01g00299 871 SUPERFAMILY Clathrin adaptor appendage domain 729 870 IPR013041 -
Gma01g00299 871 SMART alpha_adaptinc2 750 868 IPR008152 GO:0006886|GO:0016192
Gma01g00299 871 Pfam Adaptin N terminal region 27 578 IPR002553 GO:0006886|GO:0016192|GO:0030117
Gma01g00299 871 Gene3D - 2 594 IPR011989 -
Gma01g00299 871 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 753 868 IPR008153 -
Gma01g00299 871 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 5 870 - -
Gma01g00299 871 Pfam Adaptin C-terminal domain 756 868 IPR008152 GO:0006886|GO:0016192
Gma01g00299 871 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 5 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00299 Gma-Chr1 3425593 3438558 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00299 K12391 - gmx:100802164 1598.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00299 01 3425593 3438558 Gma01g00299 01 3425593 3438558 ECH
Gma01g00299 01 3425593 3438558 Gma02g00296 02 3094065 3106095 GST
Gma01g00299 01 3425593 3438558 Gma18g01225 18 19569222 19582185 PCT
Gma18g01225 18 19569222 19582185 Gma01g00299 01 3425593 3438558 PCT