Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01180 ATGGCTCTATCGCGCGTGGCTCAATCGTCGCCATCACAGTCGAATCTTTTGAAACCCCTCTCGTCGTACTTATCCCTACGACGCCGTTCGGTGTCGACCTCGTCGGAGCCCCTCACCGTGGAGACCTCGGTGCCCTTCACCTCCCACAACTGCGATGCGCCTCCACGCGCCGTGGAGACGTCCTCGGCGGAGCTCTTCTCGTTCTTCCGTGACATGGCGCTGATGCGGCGGATGGAGATCGCGGCGGACTCGCTCTACAAGGCCAAGCTCATACGCGGCTTCTGCCACCTCTACGATGGCCAGGAGGCCGTCGCCGTCGGCATGGAGGCCGCCATCACGCGCAAGGATTGTATCATCACCGCCTACCGCGACCACTGCACCTTCCTCGCCCGCGGTGGAACCCTAATCGAGGTCTTCGCTGAGCTCATGGGCCGCCGCGACGGCTGCTCCAAGGGGAAAGGAGGATCCATGCACTTTTACCGCAAAGAAGGTGGCTTCTACGGTGGCCATGGAATTGTTGGGGCGCAGGTTCCGCTGGGGTGTGGCTTGGCTTTTGCTCAGAAGTATTGTAAGGATGAGAATGTTACGTTTTCTATGTACGGCGATGGTGCTGCCAATCAGGGGCAGTTGTTCGAGGCGCTTAACATTTCTGCGCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTAGTTATTACAAGCGTGGGGATTATGTTCCTGGATTGAAGGTAGATGGCATGGATGCTCTTGCTGTGAAACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTAAAGAATGGTCCCATTATTCTCGAGATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATTGCTACTGAAAAGGAGCTAAAGGACATTGAAAAGGAAATAAGAAAAGAAGTAGATGAAGCCATTGCCAAAGCTAAGGAAAGTCAAATGCCAGAGCCATCTGATTTATTTACCAATGTATATGTAAAAGGCTTCGGTGTCGAGGCTTGTGGCGCGGATAGGAAAGAACTTAGGGCTACTTTGCCCTGA 1188 0.5269 MALSRVAQSSPSQSNLLKPLSSYLSLRRRSVSTSSEPLTVETSVPFTSHNCDAPPRAVETSSAELFSFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRKDCIITAYRDHCTFLARGGTLIEVFAELMGRRDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLGCGLAFAQKYCKDENVTFSMYGDGAANQGQLFEALNISALWDLPSILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEFALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLTHEIATEKELKDIEKEIRKEVDEAIAKAKESQMPEPSDLFTNVYVKGFGVEACGADRKELRATLP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01180 395 Coils Coil 333 357 - -
Gma18g01180 395 CDD TPP_E1_PDC_ADC_BCADC 68 358 - -
Gma18g01180 395 MobiDBLite consensus disorder prediction 298 317 - -
Gma18g01180 395 Gene3D - 20 389 - -
Gma18g01180 395 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 59 376 IPR029061 -
Gma18g01180 395 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 13 395 - -
Gma18g01180 395 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 64 375 IPR017597 GO:0004739|GO:0006086|GO:0043231
Gma18g01180 395 Pfam Dehydrogenase E1 component 71 366 IPR001017 GO:0016624
Gma18g01180 395 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 13 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01180 Gma-Chr18 18134203 18154043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01180 1 395 Acyl Lipid Metabolism Gene Families AT1G24180 79.545 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01180 K00161 - gmx:100813933 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01180 18 18134203 18154043 Gma18g01180 18 18134203 18154043 ECH
Gma01g00345 01 4091913 4097365 Gma18g01180 18 18134203 18154043 PCT
Gma02g00244 02 2458875 2464399 Gma18g01180 18 18134203 18154043 PCT
Gma18g01180 18 18134203 18154043 Gma01g00345 01 4091913 4097365 PCT
Gma18g01180 18 18134203 18154043 Gma02g00244 02 2458875 2464399 PCT