Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00345 ATGCTTCTGTCACGCATATCCCACCGCTGCATCGGATCCACTCTCACAAAACCCTTCTCCGCCGTCATCTCCACCTCCGACACCCCCCTCACCATCGAGACCTCCATCCACTCCACCGCGCACAACTGCGAACCCCCCTCGCGCGCCGTGGCAACCTCCTCCTCGGAGCTCCTCACCTTCTTCCTCGATATGGCCCTGATGCGGCGCATGGAGATCGCCGCGGACTCCCTCTACAAGGCCAAGCTCATCCGCGGCTTCTGCCACCTCTACGACGGCCAGGAGGCTGTCGCCGTCGGCATGGAGGCCGCCATCACAAAAATGGACTCCATCATCACCGCTTACCGCGACCACTGCACCTTCCTCGGCCGCGGTGGCACGCTCCTCGAGGTCTTCGCCGAGCTCATGGGCCGCAGGGATGGGTGCTCGAAGGGGAAGGGTGGTTCCATGCATTTTTACAAGAAGGAGAGTGGGTTCTACGGTAAGTATTCTAAGGATGAGAGTGTCACTTTTGCTATGTATGGAGATGGTGCTGCCAATCAGGGACAGCTCTTTGAGGCGCTTAGCATTGCTGCGCTTTGGGATCTTCCTGCTATTTTGGTCTGCGAGAATAATCACTATGGGATGGGGACTGCGGAGTGGAGGGCTGCCAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGTGCCTGGCTTGAAGGTTGATGGCATGGATGTTCTTGCTGTTAAACAAGCTTGCAAATTTGCAAAGGAACATGCTTTGAAGAATGGACTCCTTATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCATGGCAGCACATACTGTACACGTGATGAAATTTCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGTTATTGTCTCATGATATTGCTGCTAAAAAGGAGCTAAAGGACATCGAGAAAGAAGTCAGAAAAGAAGTTGACGAAGCCATTGCTAAAGCAAAGGAGAATCCAATGCCAGACCCATCTGATCTATTTACCATTGTCTACATTAAAGGTTACGGAGTTGAGACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTGCCATAA 1107 0.5167 MLLSRISHRCIGSTLTKPFSAVISTSDTPLTIETSIHSTAHNCEPPSRAVATSSSELLTFFLDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKMDSIITAYRDHCTFLGRGGTLLEVFAELMGRRDGCSKGKGGSMHFYKKESGFYGKYSKDESVTFAMYGDGAANQGQLFEALSIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGLLILEMDTYRYHGHSMSDHGSTYCTRDEISGVRQERDPIERVRKLLLSHDIAAKKELKDIEKEVRKEVDEAIAKAKENPMPDPSDLFTIVYIKGYGVETFGADRKEVRATLP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00345 368 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 161 368 - -
Gma01g00345 368 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 23 160 - -
Gma01g00345 368 Pfam Dehydrogenase E1 component 159 339 IPR001017 GO:0016624
Gma01g00345 368 Gene3D - 8 361 - -
Gma01g00345 368 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 161 368 - -
Gma01g00345 368 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 23 160 - -
Gma01g00345 368 CDD TPP_E1_PDC_ADC_BCADC 63 331 - -
Gma01g00345 368 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 46 349 IPR029061 -
Gma01g00345 368 Coils Coil 310 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00345 Gma-Chr1 4091913 4097365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00345 1 368 Acyl Lipid Metabolism Gene Families AT1G24180 72.405 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00345 K00161 - gmx:100816737 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00345 01 4091913 4097365 Gma01g00345 01 4091913 4097365 ECH
Gma01g00345 01 4091913 4097365 Gma02g00244 02 2458875 2464399 GST
Gma01g00345 01 4091913 4097365 Gma18g01180 18 18134203 18154043 PCT
Gma18g01180 18 18134203 18154043 Gma01g00345 01 4091913 4097365 PCT