Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00317 ATGGCATACAAAGTGGACCATGAATACGACTATCTCTTCAAGATCGTACTCATTGGAGACTCTGGTGTTGGAAAATCCAACATTCTCTCTAGGTTTACCCGAAATGAGTTCTGCTTGGAGTCTAAGTCTACCATTGGGGTTGAATTCGCAACCAGAACCTTACAGGTAGAGGGGAAGACTGTGAAGGCACAAATATGGGACACAGCGGGTCAAGAGAGGTACCGAGCTATAACAAGTGCATACTACAGAGGAGCAGTGGGTGCCTTATTGGTGTATGACATAACCAAGAGGCAAACATTTGAGAATGTACAAAGGTGGCTCCGTGAACTGAGGGACCATGCAGACTCCAACATTGTTATTATGATGGCTGGAAACAAGTCTGATCTCAACCATCTCAGAGCAGTCTCTACTGATGATGCTCAGAATTTGGCTGAGAGAGAGGCTCTCTCATTCCTAGAGACTTCAGCATTAGAGGCCTTCAATGTTGAGAAAGCATTTCAAACCATTTTGTTTGACATATACCAAATTATGAGTAAAAAGGCACTGGCTGCACAGGGAGCAGCTTCCACTACTAGCCTTCCTCATGGGACTACCATAAATGTCTCAAATATGTCAGGTAGTGTGGAGAAGAAATCAGCTTGTTGCTCCAATTAA 654 0.4404 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTDDAQNLAEREALSFLETSALEAFNVEKAFQTILFDIYQIMSKKALAAQGAASTTSLPHGTTINVSNMSGSVEKKSACCSN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00317 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Gma18g00317 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Gma18g00317 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Gma18g00317 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Gma18g00317 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Gma18g00317 217 ProSiteProfiles small GTPase Ras family profile. 1 217 IPR001806 GO:0003924|GO:0005525
Gma18g00317 217 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Gma18g00317 217 SMART ras_sub_4 10 176 - -
Gma18g00317 217 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 216 - -
Gma18g00317 217 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Gma18g00317 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Gma18g00317 217 SMART arf_sub_2 1 180 - -
Gma18g00317 217 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Gma18g00317 217 PANTHER - 1 216 - -
Gma18g00317 217 CDD Rab11_like 10 174 - -
Gma18g00317 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Gma18g00317 217 Gene3D - 5 215 IPR027417 -
Gma18g00317 217 SMART ran_sub_2 18 201 - -
Gma18g00317 217 SMART rab_sub_5 13 176 - -
Gma18g00317 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00317 Gma-Chr18 2615776 2617310 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00317 K07904 - gmx:100799521 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00317 18 2615776 2617310 Gma18g00317 18 2615776 2617310 ECH
Gma18g00317 18 2615776 2617310 Gma14g00551 14 5306889 5308883 PCT
Gma18g00317 18 2615776 2617310 Gma02g02380 02 49855003 49857777 PCT
Gma14g00551 14 5306889 5308883 Gma18g00317 18 2615776 2617310 PCT
Gma02g02380 02 49855003 49857777 Gma18g00317 18 2615776 2617310 PCT