Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02380 ATGGCGTTCAAAGTGGACCATGAATACGATTACCTCTTCAAGGTCGTATTGATTGGGGACTCCGGGGTTGGAAAATCTAACATCCTTTCCAGATTTACGAGAAATGAGTTCTGCTTGGAATCTAAGTCTACCATTGGGGTTGAATTCGCAACCAGAACATTGCAGGTGGAGGGGAAGACTGTGAAGGCACAAATATGGGACACTGCAGGGCAAGAGAGGTACAGAGCCATCACCAGTGCCTACTACAGAGGAGCTGTTGGTGCCTTGTTGGTCTATGACATAACCAAGAGGCAAACATTTGACAATGTGCAGAGGTGGCTTCGGGAACTACGGGACCACGCAGACTCCAACATTGTTATCATGATGGCTGGAAACAAATCTGACCTGAATCATCTGAGAGCAGTGTCTACTGAGGATGCTCAAAGTTTGGCTGAGAGGGAAGGTTTGTCCTTTCTAGAGACTTCAGCATTGGAGGCATACAATGTTGATAAGGCATTTCAAACCATTTTGTTTGATATATATCACATTATAAGTAAAAAGGCACTGGCAGCACAAGAGGCTACTTCCTCTACTGGCCTTCCACAAGGAACTACCATAAATGTCTCGAATATGGCTGGTAATGCCGGCGGCAATAGAAGTTGTTGCTCTAACTAA 654 0.4526 MAFKVDHEYDYLFKVVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAQSLAEREGLSFLETSALEAYNVDKAFQTILFDIYHIISKKALAAQEATSSTGLPQGTTINVSNMAGNAGGNRSCCSN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02380 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Gma02g02380 217 SMART ras_sub_4 10 176 - -
Gma02g02380 217 ProSiteProfiles small GTPase Ras family profile. 1 205 IPR001806 GO:0003924|GO:0005525
Gma02g02380 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Gma02g02380 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Gma02g02380 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Gma02g02380 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Gma02g02380 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Gma02g02380 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Gma02g02380 217 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Gma02g02380 217 Gene3D - 5 215 IPR027417 -
Gma02g02380 217 Pfam Ras family 14 173 IPR001806 GO:0003924|GO:0005525
Gma02g02380 217 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 217 - -
Gma02g02380 217 SMART ran_sub_2 18 214 - -
Gma02g02380 217 CDD Rab11_like 10 174 - -
Gma02g02380 217 PANTHER - 1 217 - -
Gma02g02380 217 SMART rab_sub_5 13 176 - -
Gma02g02380 217 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Gma02g02380 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02380 Gma-Chr2 49855003 49857777 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02380 K07904 - gmx:100813743 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02380 02 49855003 49857777 Gma14g00551 14 5306889 5308883 ECH
Gma02g02380 02 49855003 49857777 Gma02g02380 02 49855003 49857777 ECH
Gma14g00551 14 5306889 5308883 Gma02g02380 02 49855003 49857777 GST
Gma18g00317 18 2615776 2617310 Gma02g02380 02 49855003 49857777 PCT
Gma02g02380 02 49855003 49857777 Gma18g00317 18 2615776 2617310 PCT