Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02007 ATGTCCAAAGTTCTCGGCTTTTCCGGAGTTGACGATTTTTGCCCGATGGGATCAATATATGCCAACCCCAAGGAAGCAAGTTTCTTCTTGCCTCTTGGCCCTCAAGTTGATGTATACTTTCCTCCTCGGAAGAGATCGCGTGTCAACACTCCATTCGTTTTCGATGGAGAATGGTTTGAGCAAAAGCCGAAAACCTCTGTTGAAGCCTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGGAGGTTGCCTTCTGGGGAAGACAGGAGTGCATGTGCCTGTGTTTCCAAGCGATGGCTTATGCTTCTAAGCAGTATTTGCAAAAATGAAATCTGTGTTAACAAAAATGCCACTGTAGAGACCATTGAAAAGGAGGGTGATGATGTAGAATTTGGAGGTGAGGGATATCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACAGATGTTAGACTAGCTGCCATAGCTGTTGGGACTTCGTCTCGGGGAGGATTGGGGAAGCTCTCAATCCGTGGAAGCAACATGGTTCGTGGGGTGACTAGTCATGGTCTCAAGGCTGTTGCTCGTGGATGCCCTTCTTTGAAGGCTCTTTCTCTATGGAATGTTGCTACCGTTGGTGATGAGGGCCTAATTGAGATTGCTAATGGATGCCACCAGCTAGAGAAGCTTGACCTTTGCAAGTGCCCTGCAATTACTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCAGAATCTGACTGAGTTGTCATTTGAATCTTGCCCTAACATTGGTAATGAAGGTCTACGAGCTATTGGGAAGTTATGCTCCAATCTGAAGTCCATATCCATCAAGGACTGCACTGGTGTTAGTGATCACGGAATTGCTGGATTGCTTTCTTCAACTTCTTTGGTTCTATCAAAGGTGAAGCTCCAGGCATTGACTGTTTCAGATCTCTCTCTAGCTGTTATTGGTCATTATGGCAAGTCAGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTCAGCGAGAGGGGGTTCTGGGTCATGGGTAATGGTAATGGATTGCAGAAGCTAAAATCACTTACAGTTGCATCTTGCAAAGGAGTAACAGATATTGGGCTTGAAGCTGTAGGAAAGGGTTGTCCAAATCTGAAAATTGCACACCTCCACAAGTGTGCATTTCTGTCAGACAATGGGTTGATGTCATTCGCCAAGGCTGCTTCATCACTTGAAAGCCTACGATTGGAAGAGTGCCACAGAATTACCCAACTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTATCTCTTTGGTGAGCTGCTATGGGATCAAAGATCTGAACTTGGTGTTGCCAACAGTATCTCCATGTGAATCACTTCGGTCGTTGTCTATCAGTAACTGTTCTGGATTTGGCAACGCCTCCCTGTCTGTATTGGGAAAGCTGTGCCCTCAGCTTCAGCATGTTGAATTGAGTGGACTTGAGGGAGTGACAGATGCAGGGCTTCTTCCACTCCTTGAGAGTTCCGAGGCTGGTTTGGTTAAAGTGAACCTTAGTGGTTGCACAAACATTACCGACAAAGTAGTTTCATCCTTGGCCAATCTGCATGGTTGGACTCTTGAGAATCTAAACCTTGATGGTTGCAAAAATATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGTGATCTTGATGTCTCCAAGTGCACAATCACTGATGCTGGGATTGCAGTCCTGGCACATGCCGAACAGATTAATCTGCAAATCCTTTCTTTGTCAGGTTGCACTTTGGTCTCAGACAGGAGCTTAACCGCTCTGAGAAAATTAGGCCACACCCTTTTGGGACTAAACATCCAACACTGCAATGCAATCAACAACAGCACGGTTGACACACTTGTGGAGTTTCTCTGGAGGTGTGACATCCTCTCCTGA 1935 0.4548 MSKVLGFSGVDDFCPMGSIYANPKEASFFLPLGPQVDVYFPPRKRSRVNTPFVFDGEWFEQKPKTSVEALPDECLFEIFRRLPSGEDRSACACVSKRWLMLLSSICKNEICVNKNATVETIEKEGDDVEFGGEGYLSRSLEGKKATDVRLAAIAVGTSSRGGLGKLSIRGSNMVRGVTSHGLKAVARGCPSLKALSLWNVATVGDEGLIEIANGCHQLEKLDLCKCPAITDKALVAIAKNCQNLTELSFESCPNIGNEGLRAIGKLCSNLKSISIKDCTGVSDHGIAGLLSSTSLVLSKVKLQALTVSDLSLAVIGHYGKSVTDLVLNCLPNVSERGFWVMGNGNGLQKLKSLTVASCKGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLMSFAKAASSLESLRLEECHRITQLGFFGVLFNCGAKLKAISLVSCYGIKDLNLVLPTVSPCESLRSLSISNCSGFGNASLSVLGKLCPQLQHVELSGLEGVTDAGLLPLLESSEAGLVKVNLSGCTNITDKVVSSLANLHGWTLENLNLDGCKNISDASLMAIAENCALLCDLDVSKCTITDAGIAVLAHAEQINLQILSLSGCTLVSDRSLTALRKLGHTLLGLNIQHCNAINNSTVDTLVEFLWRCDILS 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02007 644 SUPERFAMILY RNI-like 184 295 - -
Gma17g02007 644 Pfam Leucine Rich repeat 565 581 IPR001611 GO:0005515
Gma17g02007 644 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Gma17g02007 644 Gene3D Ribonuclease Inhibitor 240 444 IPR032675 -
Gma17g02007 644 SUPERFAMILY F-box domain 61 104 IPR036047 GO:0005515
Gma17g02007 644 Pfam F-box domain 70 106 IPR001810 GO:0005515
Gma17g02007 644 Gene3D Ribonuclease Inhibitor 146 239 IPR032675 -
Gma17g02007 644 Gene3D - 64 102 - -
Gma17g02007 644 PANTHER UNCHARACTERIZED 17 635 - -
Gma17g02007 644 SUPERFAMILY RNI-like 307 640 - -
Gma17g02007 644 PANTHER EIN3-BINDING F-BOX PROTEIN 1 17 635 - -
Gma17g02007 644 SMART LRR_CC_2 347 372 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 453 478 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 241 266 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 373 398 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 559 583 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 585 610 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 267 292 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 215 240 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 533 558 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 399 424 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 506 531 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 189 214 IPR006553 -
Gma17g02007 644 SMART LRR_CC_2 479 504 IPR006553 -
Gma17g02007 644 Gene3D Ribonuclease Inhibitor 445 644 IPR032675 -
Gma17g02007 644 SMART fbox_2 70 111 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02007 Gma-Chr17 36000711 36004336 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02007 K14515 - gmx:100819226 1277.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02007 17 36000711 36004336 Gma17g02007 17 36000711 36004336 ECH
Gma17g02007 17 36000711 36004336 Gma14g01098 14 14771175 14774852 GST
Gma17g02007 17 36000711 36004336 Gma04g00621 04 5677824 5680286 PCT
Gma17g02007 17 36000711 36004336 Gma06g00606 06 5492527 5496166 PCT
Gma04g00621 04 5677824 5680286 Gma17g02007 17 36000711 36004336 PCT
Gma06g00606 06 5492527 5496166 Gma17g02007 17 36000711 36004336 PCT