Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00621 ATGTCTAAAGTCTTCAGCTTTACCGGAAATGATGATTTTTATCATGGGGGTCCTATTTATCCTAACCCGAAGGAACCGTGTCTCTTCTTGTCTCTTGGCCGTCAAGTTGATGTTTACCTTCCTCTTCAGAAGAGGTCTCGCTTCAGTGTTCCATTTGATATCAGTGGAGAATGGTTTGAGCAGAAGCCTAAGACATCTATTGAATCTTTGCCAGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGCAGGCCAAGATAGGAGTGTCTGCGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTGTAAGAATGAAACTTACAGCAACGAAAGTACTGGAAATGAAAATCAGGAAATTAGTGATGAAGGATACCTATCCCGAAGCTTGGAGGGAAAGAAGGCAACAGATGTAAGACTTGCTGCCATTGCCATTGGGACAGCCTCTCGAGGAGGGTTGGGGAAGCTTACAATTCGTGGATGCAATTCAGATCGTGGGGTGACTAGTGTAGGTCTCAAGGCAATTGCTCATGGGTGCCCTTCTCTAAAGGTTTGCTCTCTATGGGATGTTGCTACTGTTGATGATGAAGGCTTGATTGAGATTGCTAGCGGGTGTCACCGGTTAGAGAAGCTTGACCTATGCAAGTGTCCTAATATTTCTGACAAGACTTTAATTGCAGTTGCAAAGAACTGTCCAAAGCTGGCTGAGTTATCAATAGAGTCGTGTCCTAACATTGGCAATGAAGGTCTACAAGCTATTGGGAAGTGTCCCAATCTAAGGTCTATCTCAATCAAGGATTGCTCTGGAGTTGGTGATCAGGGAGTTGCTGGTGTGTTGTCTTCAGCTTCTTTTGCTCTAACAAAGGTGAAGCTTGAGTCGCTGAATGTTTCTGATCTCTCTCTAGCAGTGATTGGGCATTACGGCATTGCAGTTACCGATCTTGTCCTAAGTTGCCTCCCAAATGTCAGTGAGAAAGGGTTCTGGGTTATGGGTAATGGCCATGGACTGCAGAAACTAACTTCAATCACAATTGATTGCTGCCGAGGAGTAACAGATGTTGGGCTTGAAGCTATTGGAAGGGGTTGTCCAAATGTGCAAAACTTCAAGCTTCGGAAGTGTGCTTTTCTGTCAGACAAGGGATTGGTATCGTTTGCCAGGGCTGCTCCATCAGTTGAGAGCCTACAATTGCAAGAGTGCCACAGAATTACCCAAATTGGGCTCTTTGGTGTCTTTTTTAACTGTGGTGCAAAATTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAGATCTCAATATGGAATTGCCTGCAATATCTCCTTCTGAATCAATTTGGTCATTAACAATCCGTGACTGCCCTGGATTTGGCGATGCTAACCTTGCTTTACTTGGAAAGCTGTGTCCTCGGATTCAGCATGTTGAATTGAGTGGACTTCAGGGAGTAACAGATGCAGGGTTTCTTCCACTGCTGGAGAGCTCTGAGGCTGGTCTGGTTAAAGTTAATCTAAGTGGTTGTGTAAATCTGACGGACAGAGTAGTTTTGTCCATGGTTAACTCACATGGATGGACTCTCGAGGTGCTAAGCCTTGATGGTTGTAAAAGAGTCAGTGATGCTAGCTTGATGGCTATTGCAGGTAGTTGCCCAGTGCTCGCTGATCTCGATGTTTCCAGGTGTGCAATCACTGATACTGGTATCGCAGCCCTTGCCCGAGGAAAACAGTTCAACCTGGAGGTACTTTCTTTGGCAGGTTGCGCATTGGTTTCAGACAAGAGCGTGCCTGCATTGAAAAAATTGGGCCGTTCCCTTGCTGGATTAAATATCAAGCTTTGCAATGCAATCAGCAGCCGCTCAGTTGACAAGCTTCTGGGACATCTCTGCATGTGTGACATCCTCTACTGA 1911 0.4537 MSKVFSFTGNDDFYHGGPIYPNPKEPCLFLSLGRQVDVYLPLQKRSRFSVPFDISGEWFEQKPKTSIESLPDECLFEILRRLPAGQDRSVCASVSKRWLMLLSSICKNETYSNESTGNENQEISDEGYLSRSLEGKKATDVRLAAIAIGTASRGGLGKLTIRGCNSDRGVTSVGLKAIAHGCPSLKVCSLWDVATVDDEGLIEIASGCHRLEKLDLCKCPNISDKTLIAVAKNCPKLAELSIESCPNIGNEGLQAIGKCPNLRSISIKDCSGVGDQGVAGVLSSASFALTKVKLESLNVSDLSLAVIGHYGIAVTDLVLSCLPNVSEKGFWVMGNGHGLQKLTSITIDCCRGVTDVGLEAIGRGCPNVQNFKLRKCAFLSDKGLVSFARAAPSVESLQLQECHRITQIGLFGVFFNCGAKLKVLTLISCYGIKDLNMELPAISPSESIWSLTIRDCPGFGDANLALLGKLCPRIQHVELSGLQGVTDAGFLPLLESSEAGLVKVNLSGCVNLTDRVVLSMVNSHGWTLEVLSLDGCKRVSDASLMAIAGSCPVLADLDVSRCAITDTGIAALARGKQFNLEVLSLAGCALVSDKSVPALKKLGRSLAGLNIKLCNAISSRSVDKLLGHLCMCDILY 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00621 636 ProSiteProfiles F-box domain profile. 64 114 IPR001810 GO:0005515
Gma04g00621 636 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 627 - -
Gma04g00621 636 Pfam F-box domain 68 106 IPR001810 GO:0005515
Gma04g00621 636 PANTHER UNCHARACTERIZED 16 627 - -
Gma04g00621 636 SMART fbox_2 70 111 IPR001810 GO:0005515
Gma04g00621 636 Gene3D Ribonuclease Inhibitor 131 355 IPR032675 -
Gma04g00621 636 Gene3D Ribonuclease Inhibitor 445 635 IPR032675 -
Gma04g00621 636 Gene3D Ribonuclease Inhibitor 362 443 IPR032675 -
Gma04g00621 636 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Gma04g00621 636 SMART LRR_CC_2 498 523 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 365 390 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 234 259 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 182 207 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 391 416 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 471 496 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 551 575 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 577 602 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 339 364 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 603 628 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 208 233 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 525 550 IPR006553 -
Gma04g00621 636 SMART LRR_CC_2 260 284 IPR006553 -
Gma04g00621 636 Gene3D - 60 109 - -
Gma04g00621 636 SUPERFAMILY RNI-like 169 408 - -
Gma04g00621 636 Pfam Leucine Rich repeat 233 256 IPR001611 GO:0005515
Gma04g00621 636 Pfam Leucine Rich repeat 551 573 IPR001611 GO:0005515
Gma04g00621 636 SUPERFAMILY RNI-like 293 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00621 Gma-Chr4 5677824 5680286 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00621 K14515 - gmx:100805418 1272.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00621 04 5677824 5680286 Gma04g00621 04 5677824 5680286 ECH
Gma04g00621 04 5677824 5680286 Gma06g00606 06 5492527 5496166 GST
Gma17g02007 17 36000711 36004336 Gma04g00621 04 5677824 5680286 PCT
Gma14g01098 14 14771175 14774852 Gma04g00621 04 5677824 5680286 PCT
Gma04g00621 04 5677824 5680286 Gma17g02007 17 36000711 36004336 PCT
Gma04g00621 04 5677824 5680286 Gma14g01098 14 14771175 14774852 PCT