Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01387 ATGGCGCCAGTGTCAGCTCTCGCAAAGTACAAGCTGGTGTTCTTGGGCGATCAATCCGTTGGGAAAACCAGCATCATCACTCGCTTCATGTACGACAAATTCGACAACACTTATCAGGCTACAATCGGTATCGATTTTCTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAATTGTGGGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAGCCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTATGTTTATTGAAGCTAGTGCAAAAGCTGGCTTTAATATAAAGGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAAACATTATCTACAACAAAACAGGAAGATATGGTTGACGTGAACCTGAGGTCTTCTGGTAGCCATGATTCCCAACCTCAGTCGGGTGGATGTTCTTGCTGA 621 0.4364 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDVIVVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSTTKQEDMVDVNLRSSGSHDSQPQSGGCSC 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01387 206 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Gma17g01387 206 PRINTS Transforming protein P21 ras signature 10 31 - -
Gma17g01387 206 PRINTS Transforming protein P21 ras signature 33 49 - -
Gma17g01387 206 PRINTS Transforming protein P21 ras signature 51 73 - -
Gma17g01387 206 PRINTS Transforming protein P21 ras signature 113 126 - -
Gma17g01387 206 PRINTS Transforming protein P21 ras signature 148 170 - -
Gma17g01387 206 CDD Rab6 10 170 - -
Gma17g01387 206 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Gma17g01387 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Gma17g01387 206 SMART rab_sub_5 10 173 - -
Gma17g01387 206 Gene3D - 6 201 IPR027417 -
Gma17g01387 206 SMART ran_sub_2 15 206 - -
Gma17g01387 206 PANTHER GTP-BINDING PROTEIN RAB6 1 206 - -
Gma17g01387 206 SMART ras_sub_4 7 173 - -
Gma17g01387 206 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Gma17g01387 206 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Gma17g01387 206 PANTHER DRAB5-RELATED 1 206 - -
Gma17g01387 206 ProSiteProfiles small GTPase Rab1 family profile. 5 206 - -
Gma17g01387 206 ProSiteProfiles small GTPase Ras family profile. 5 206 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01387 Gma-Chr17 12844540 12850213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01387 10 168 EF-hand Containing Proteins AT3G63150 23.636 6.98e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01387 K07893 - gmx:100527651 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01387 17 12844540 12850213 Gma17g01387 17 12844540 12850213 ECH
Gma17g01387 17 12844540 12850213 Gma05g00648 05 7157354 7162502 GST
Gma01g02050 01 55850430 55854025 Gma17g01387 17 12844540 12850213 PCT
Gma11g00365 11 3007726 3016709 Gma17g01387 17 12844540 12850213 PCT
Gma17g01387 17 12844540 12850213 Gma01g02050 01 55850430 55854025 PCT
Gma17g01387 17 12844540 12850213 Gma11g00365 11 3007726 3016709 PCT