Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02050 ATGGCGCCTGTTTCAGCTTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGAAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGggatacagctgggcaggaaagatttagaagtcttattccaagctacatcagggactcatctgtagctgttattgtatatgaTGTTGCAAGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAGAAAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTTGTTGAGAAAAGACAAGTCTCTATAGAGGAAGGAGAAGCAAAAGCACGTGAGCTCAATGTCATGTTTATTGAAACTAGTGCTAAGGCTGGGTTTAATATAAAGGCCCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAACTGGCAGTGCGCAGTCTCAACCTCAGCCAAGTGGATGTGCTTGTTAA 624 0.359 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLKSTTGSAQSQPQPSGCAC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02050 207 ProSiteProfiles small GTPase Rho family profile. 3 179 - -
Gma01g02050 207 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Gma01g02050 207 CDD Rab6 10 170 - -
Gma01g02050 207 SMART rab_sub_5 10 173 - -
Gma01g02050 207 ProSiteProfiles small GTPase Ras family profile. 5 207 IPR001806 GO:0003924|GO:0005525
Gma01g02050 207 PANTHER GTP-BINDING PROTEIN RAB6 1 207 - -
Gma01g02050 207 SMART ran_sub_2 15 207 - -
Gma01g02050 207 SMART ras_sub_4 7 173 - -
Gma01g02050 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 178 IPR027417 -
Gma01g02050 207 ProSiteProfiles small GTPase Rab1 family profile. 5 207 - -
Gma01g02050 207 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Gma01g02050 207 PRINTS Transforming protein P21 ras signature 10 31 - -
Gma01g02050 207 PRINTS Transforming protein P21 ras signature 33 49 - -
Gma01g02050 207 PRINTS Transforming protein P21 ras signature 51 73 - -
Gma01g02050 207 PRINTS Transforming protein P21 ras signature 113 126 - -
Gma01g02050 207 PRINTS Transforming protein P21 ras signature 148 170 - -
Gma01g02050 207 Gene3D - 6 202 IPR027417 -
Gma01g02050 207 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Gma01g02050 207 PANTHER DRAB5-RELATED 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02050 Gma-Chr1 55850430 55854025 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02050 K07893 - gmx:100794537 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02050 01 55850430 55854025 Gma01g02050 01 55850430 55854025 ECH
Gma01g02050 01 55850430 55854025 Gma11g00365 11 3007726 3016709 GST
Gma01g02050 01 55850430 55854025 Gma17g01387 17 12844540 12850213 PCT
Gma01g02050 01 55850430 55854025 Gma05g00648 05 7157354 7162502 PCT
Gma17g01387 17 12844540 12850213 Gma01g02050 01 55850430 55854025 PCT
Gma05g00648 05 7157354 7162502 Gma01g02050 01 55850430 55854025 PCT