Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01296 ATGCACAAGAGCGCTTCAGGTTCCACGTTGGGCCCGGGCGGCCTGGACCTAACCCAGGCCTTCTTCAGGCCCATAACCAACGCGGCTCCTCCCTCTCCGACCAAGCGCCACAACAAGATCTCCGTGATCGGCGCCGGCAACGTGGGAATGGCCATAGCGCAGACCATCCTCACTCAGGACCTCACCGACGAGCTCGTCCTCGTCGACACCAACACCGACAAGCTCCGCGGCGAGATGCTTGACCTCCAGCACGCCGCCGCCTTCCTCCCCCGCACCAAGATCAACTCCTCCGCCGATTCCTCCGTCACCGCCGGCTCCGACCTCTGCATCGTCACCGCCGGCGCCCGCCAGATAGTCGGCGAGTCACGCCTCAACCTCCTCCAGAGGAACCTCTCCCTCTTCCGCGCCATCATTCCGCCTCTCGTCCGTTACTCCCCCGACACCATTCTCCTCATCGTTTCCAACCCCGTCGACATTCTCACCTACGTCGCTTGGAAACTCTCTGGTTTCCCCTCCAACCGCGTCATCGGCTCCGGCACCAACTTGGACTCTTCCCGCTTTCGTTTCCTCATCGCCGATCATCTCGACCTCAACGCTCAGGACGTACAGGCATATATAGTAGGGGAGCATGGGGATAGTTCGGTGGCGTTGTGGTCTAGCATTAGCATAGGGGGTGTTCCGGTTCTGAGCTTTTTGGAGAGCCAACACATTGGGTATGAGAAAGAGACGTTGGAGAACATACACAAGTCAGTGATAGATGGTGCCTATGAAGTGATCAGGCTGAAAGGGTACACTTCATGGGCCATTGGGTACTCTGTGGCTAACTTGGCACGGTCCTTCATCAGGGACCAGAGGAAGATCCACCCTGTGTCTGTTCTGGCTAAGGGCTTTTACGGGATCGATGGAGAAGTGTTCCTGAGTTTGCCTGCACTTGTTGGTAGAGGAGGGGTTCTGAGTGTGACCAATGTGCACTTGAATGAAGAGGAGACACAGAGGCTTAAGGACTCTGCCAAGACCATCCACGAGGTGCAGACTCAATTGGGTATTTGA 1050 0.5724 MHKSASGSTLGPGGLDLTQAFFRPITNAAPPSPTKRHNKISVIGAGNVGMAIAQTILTQDLTDELVLVDTNTDKLRGEMLDLQHAAAFLPRTKINSSADSSVTAGSDLCIVTAGARQIVGESRLNLLQRNLSLFRAIIPPLVRYSPDTILLIVSNPVDILTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDLNAQDVQAYIVGEHGDSSVALWSSISIGGVPVLSFLESQHIGYEKETLENIHKSVIDGAYEVIRLKGYTSWAIGYSVANLARSFIRDQRKIHPVSVLAKGFYGIDGEVFLSLPALVGRGGVLSVTNVHLNEEETQRLKDSAKTIHEVQTQLGI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01296 349 PANTHER L-LACTATE DEHYDROGENASE 1 349 - -
Gma17g01296 349 PIRSF Lac_mal_DH 34 349 IPR001557 GO:0016616|GO:0019752
Gma17g01296 349 Gene3D - 180 347 IPR015955 GO:0003824|GO:0016616
Gma17g01296 349 SUPERFAMILY LDH C-terminal domain-like 178 346 IPR015955 GO:0003824|GO:0016616
Gma17g01296 349 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Gma17g01296 349 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Gma17g01296 349 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Gma17g01296 349 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Gma17g01296 349 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Gma17g01296 349 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 42 341 IPR011304 GO:0004459|GO:0005737
Gma17g01296 349 Hamap L-lactate dehydrogenase [ldh]. 37 348 IPR011304 GO:0004459|GO:0005737
Gma17g01296 349 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 342 IPR022383 GO:0016616
Gma17g01296 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 177 IPR036291 -
Gma17g01296 349 Gene3D - 22 179 - -
Gma17g01296 349 CDD LDH_1 35 346 - -
Gma17g01296 349 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 349 - -
Gma17g01296 349 Pfam lactate/malate dehydrogenase, NAD binding domain 39 177 IPR001236 GO:0016491
Gma17g01296 349 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01296 Gma-Chr17 11636088 11638316 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01296 K00016 - gmx:100803035 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01296 17 11636088 11638316 Gma17g01296 17 11636088 11638316 ECH
Gma17g01296 17 11636088 11638316 Gma05g00549 05 5414456 5417051 GST
Gma01g02117 01 56507161 56508958 Gma17g01296 17 11636088 11638316 PCT
Gma11g00291 11 2347984 2348606 Gma17g01296 17 11636088 11638316 PCT