Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02117 ATGGCAATGCACAAGAGCAGTTCAGGTTCAGCATTGGGTCCGGGAGGCTTGGACTTAACTCAAGCCTTCTTCAAGTCGATCATGAACGCTGCAGCTTCTTCTCCCACCAAACGCCACAACAAAATCTCTGTTGTTGGGGCAGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTGCTCGTGGATGCAATTCCTGACAAACTCCGCGGCGAGATGCTTGACCTCCAGCACGCCGCTGCCTTCCTCCCCCGCACCAGAATTCAGGCCTCCACCGATTACTCGGTCACGCTGGGCTCTGACCTCTGCATTGTCACAGCCGGGGCTCGTCAAATTAATGGCGAGTCCCGGCTCAATCTCCTACAGAGGAATGTCACACTCTTTCAGAAAATCATACCTCCTTTGGCTCGTTACTCCCCAGACACCATTCTTCTCATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAGCTTTCAGGGTTCCCTTCAAACCGCGTCATTGGCTCCGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCTCAAGATGTCCAGGCTTTTATAGTGGGGGAACATGGTGACAGCTCAGTGGCTCTGTGGTCTAGTATTAGTGTTGGGGGTGTTCCGGTGCTGAGTTTTTTGGAGAAGCAAGAAATTGCGTATGAGAAGGAAATGTTGGAGAACATACACAAGGAAGTTATACAGGGTGCTTATGAAGTTATCAATCTGAAAGGGTACACTTCTTGGGCAATAGGATACTCGGTGGCAAACTTGGCACGAACCATTCTCAGGGACCAAAGGAGGGTCCACCCTGTCTCGGTTCTTGCAAAGGGTTTTTATGGCATTGATGATGGGGAAGTGTTTCTCAGCTTGCCTGCACAACTAGGAAGAGGAGGGGTTTTGGGTGTAACCAATGTGCACTTGACTGAAGAAGAGACACAGAGGCTTAGGGACTCAGCTAAGACAATCCTCCAAGTGCAGAATCAGTTGGTTATTTGA 1059 0.5033 MAMHKSSSGSALGPGGLDLTQAFFKSIMNAAASSPTKRHNKISVVGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSVTLGSDLCIVTAGARQINGESRLNLLQRNVTLFQKIIPPLARYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEIAYEKEMLENIHKEVIQGAYEVINLKGYTSWAIGYSVANLARTILRDQRRVHPVSVLAKGFYGIDDGEVFLSLPAQLGRGGVLGVTNVHLTEEETQRLRDSAKTILQVQNQLVI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02117 352 Gene3D - 22 181 - -
Gma01g02117 352 PANTHER L-LACTATE DEHYDROGENASE 3 352 - -
Gma01g02117 352 PIRSF Lac_mal_DH 36 352 IPR001557 GO:0016616|GO:0019752
Gma01g02117 352 Hamap L-lactate dehydrogenase [ldh]. 39 351 IPR011304 GO:0004459|GO:0005737
Gma01g02117 352 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 346 IPR022383 GO:0016616
Gma01g02117 352 SUPERFAMILY LDH C-terminal domain-like 180 350 IPR015955 GO:0003824|GO:0016616
Gma01g02117 352 CDD LDH_1 37 349 - -
Gma01g02117 352 Gene3D - 182 350 IPR015955 GO:0003824|GO:0016616
Gma01g02117 352 Pfam lactate/malate dehydrogenase, NAD binding domain 41 179 IPR001236 GO:0016491
Gma01g02117 352 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 44 343 IPR011304 GO:0004459|GO:0005737
Gma01g02117 352 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 3 352 - -
Gma01g02117 352 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Gma01g02117 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 179 IPR036291 -
Gma01g02117 352 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Gma01g02117 352 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Gma01g02117 352 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Gma01g02117 352 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Gma01g02117 352 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02117 Gma-Chr1 56507161 56508958 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02117 K00016 - gmx:100818856 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02117 01 56507161 56508958 Gma01g02117 01 56507161 56508958 ECH
Gma01g02117 01 56507161 56508958 Gma11g00291 11 2347984 2348606 GST
Gma01g02117 01 56507161 56508958 Gma17g01296 17 11636088 11638316 PCT
Gma01g02117 01 56507161 56508958 Gma05g00549 05 5414456 5417051 PCT