Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01236 ATGGAGGACTTGTCCGGCCACCTGAATATTCCTCCGGCCGCCTCCGCGGCGACTCTCCGCCACGTGGACCGCATGATCAACTCCAACCACTACACCTCGCCTTCCAGGACAATCTACTCCGACCGCTTCATTCCCAGCAGATCTGCCTCGAAATTCGCACTCTTCAACATCGCTTCGCCGCCCGAGGGCCGCGACGACAGCTCCAGTGCCTACACCACGCTCCTCCGCACCGCGCTCTTCGGCCCCGACTTCGCGCCGCCGCCCACGCCGGAGAAAACGGCCTCGCCGGCGATGACGCTCCCCAGCCGAAATATTTTCCGGTACAAGACAGAGACGCGCCAGTCCATGCACTCGCTCTCGCCATTCATGTGCGAGGATTCGGTGCCCGGCGTTGTTCACGGTCCGGTCAAGGCTCCGAGGAAGGTTCCGAGGTCGCCTTTTAAGGTTCTGGATGCGCCTGCGCTGCAAGACGATTTCTACCTGAATCTTGTGGATTGGTCTTCGCATAATGTGTTGGCTGTTGGTCTGGGAAACTGTGTTTATCTTTGGAATGCTTGTAGCAGCAAGGTTACTAAATTATGTGACTTGGGGATTGATGACCTTGTTTGTTCGGTTGGCTGGGCTCAGCGTGGTACACACCTTGCTGTTGGAACAAGCAATGGTAAAGTTCAGATTTGGGATGCATCTCGATGCAAGAAGATAAGATCTCTGGAGGGTCATCGGTTACGTGTTGGGGCCTTGGCTTGGAGTTCATCTCTTTTGTCTTCTGGTGGCAGGGATAAGAATATTTATCAAAGAGATATCCGTGCACAAGAAGATTTTGTCAGTAAATTATCAGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATCAACACTCAACTCAGCCTGTCCTAAAGTACTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGACCGATGCATACGTTTCTGGAATACAACCACAAACTCACACTTAAGCTGCATGGACACTGGAAGCCAGGTTTGCAATCTTGTCTGGTCCAAAAATGTCAATGAACTAGTAAGTACACATGGCTATTCCCAGAATCAGATAATTGTTTGGAGATACCCCACCATGTCAAAGTTGGCCACTCTTACAGGCCATACCTATAGAGTTCTTTATCTAGCCATTTCTCCCGATGGACAGACTATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAACGTATTCCCTTCCCCTAAATCACAGAATACTGATAGTGAAATCGGAGCATCATCTCTTGGAAGAACAATTATTAGGTGA 1398 0.4993 MEDLSGHLNIPPAASAATLRHVDRMINSNHYTSPSRTIYSDRFIPSRSASKFALFNIASPPEGRDDSSSAYTTLLRTALFGPDFAPPPTPEKTASPAMTLPSRNIFRYKTETRQSMHSLSPFMCEDSVPGVVHGPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDLVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRSLEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01236 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 441 IPR001680 GO:0005515
Gma17g01236 465 Pfam WD domain, G-beta repeat 275 310 IPR001680 GO:0005515
Gma17g01236 465 Pfam WD domain, G-beta repeat 315 355 IPR001680 GO:0005515
Gma17g01236 465 Pfam WD domain, G-beta repeat 404 440 IPR001680 GO:0005515
Gma17g01236 465 PANTHER PROTEIN FIZZY-RELATED 1 13 465 - -
Gma17g01236 465 SMART WD40_4 313 355 IPR001680 GO:0005515
Gma17g01236 465 SMART WD40_4 401 440 IPR001680 GO:0005515
Gma17g01236 465 SMART WD40_4 230 267 IPR001680 GO:0005515
Gma17g01236 465 SMART WD40_4 271 310 IPR001680 GO:0005515
Gma17g01236 465 SMART WD40_4 143 184 IPR001680 GO:0005515
Gma17g01236 465 SMART WD40_4 187 227 IPR001680 GO:0005515
Gma17g01236 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 319 IPR001680 GO:0005515
Gma17g01236 465 Pfam Anaphase-promoting complex subunit 4 WD40 domain 198 251 IPR024977 -
Gma17g01236 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 441 - -
Gma17g01236 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 310 - -
Gma17g01236 465 Gene3D - 136 445 IPR015943 GO:0005515
Gma17g01236 465 SUPERFAMILY WD40 repeat-like 155 441 IPR036322 GO:0005515
Gma17g01236 465 ProSitePatterns Trp-Asp (WD) repeats signature. 427 441 IPR019775 -
Gma17g01236 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 236 IPR001680 GO:0005515
Gma17g01236 465 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 13 465 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01236 Gma-Chr17 10906535 10917499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01236 214 443 Miscellaneous Gene Families AT5G08390 21.888 3.06e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01236 K03364 - gmx:100780928 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01236 17 10906535 10917499 Gma17g01236 17 10906535 10917499 ECH
Gma17g01236 17 10906535 10917499 Gma05g00484 05 4596157 4601796 GST
Gma17g01236 17 10906535 10917499 Gma01g02156 01 56853877 56859102 PCT
Gma17g01236 17 10906535 10917499 Gma11g00249 11 1999796 2004810 PCT