Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00249 ATGGACGAATCATTCACTCCAATGTCGTCTTTTCAACATGACCACGTCCAACGATTGATAAAGTCGAACCGCTACAAGTCACCTTCCAAAACAATCTACTCCAACAGGTTCATTCCTAGCAGATCCGGTTCCAATTTTGATTTCTTCAATCTACCTCCGTCGTCCTCGTCAGAGGACAGTTGCAGTTGCAGTCCCTACAGCACCGCGCTGCGAAGTGCCTTGTTCGGACCAGACACTCCCGATAAATTTGAAAGCCCTAATATATTCCGTTACAAAACGGAGACTCGAAAGTCCTTGTATTCTCTCTCACCCACCCCCTTTACTTTCCAGGATGACCTTCTCCCTGGTTATGACCACAATCAAAAACCTCCTAAGCGTCCTCGCAAGATTCCTCCTTCGTCTTTTAAGGTTTTGGACGCCCCTGCCCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCCTCCAACAATGTCTTGGCTGTGGCTCTGGAGACCTCTGTTTATTTGTGGAATGCTTCTAGCAGCAAGGTAACTAAATTATGTGATTTGGGGATTGACAACTCAGTTTGTTCGGTTGGCTGGGCTCCACTTGGTACCTACCTGGCTGTTGGATCAAACAGTGGTAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCAATAAGAACTATGGAGGGTCATCGTTTACGTGTTGGAGCTTTGGCCTGGAGTTCTTCTCTTTTGTCTTCTGGTGGCCGGGATAAAAGTATTTATCAACGAGATATTCGTGCACAGGAGGATTTCATCAGTAAACTGTCTGGACACAAGTCAGAGGTCTGTGGACTGAAGTGGTCTTGTGATAACCGTGAGCTAGCATCCGGAGGAAATGACAACAGGTTGCTTGTTTGGAATCAAAAGTCAACCCAGCCCGTCCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCGTGGTCTCCTCATGTAAGTGGACTTCTTGCATCTGGAGGAGGAACTGCGGACCGAAACATTCGATTTTGGAATACAACCACAAACACACAGTTAAACTGTATCGACACTGGTAGTCAGGTTTGTAACCTTGTTTGGTCTAAAAATGTGAATGAACTTGTAAGCACACATGGTTACTCCCAGAACCAGATAATAGTTTGGAAATACCCCACCATGTCAAAGCTAGCAACTCTTACAGGCCATACTTACAGAGTTCTTTATCTTGCCATATCTCCTGATGGACAGACTATCGTCAGTGGGGCTGGAGACGAAACTCTTAGGTTTTGGGATGTATTCCCTTTGCAGAAATCACGGAATACCGAGAGTGAAATTGGTGCATCTTTTGGGAGAACTATCATTAGATGA 1359 0.4525 MDESFTPMSSFQHDHVQRLIKSNRYKSPSKTIYSNRFIPSRSGSNFDFFNLPPSSSSEDSCSCSPYSTALRSALFGPDTPDKFESPNIFRYKTETRKSLYSLSPTPFTFQDDLLPGYDHNQKPPKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSNNVLAVALETSVYLWNASSSKVTKLCDLGIDNSVCSVGWAPLGTYLAVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGALAWSSSLLSSGGRDKSIYQRDIRAQEDFISKLSGHKSEVCGLKWSCDNRELASGGNDNRLLVWNQKSTQPVLKFCEHTAAVKAIAWSPHVSGLLASGGGTADRNIRFWNTTTNTQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHTYRVLYLAISPDGQTIVSGAGDETLRFWDVFPLQKSRNTESEIGASFGRTIIR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00249 452 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Gma11g00249 452 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Gma11g00249 452 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Gma11g00249 452 PANTHER PROTEIN FIZZY-RELATED 1 7 452 - -
Gma11g00249 452 MobiDBLite consensus disorder prediction 113 132 - -
Gma11g00249 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 429 IPR001680 GO:0005515
Gma11g00249 452 Pfam Anaphase-promoting complex subunit 4 WD40 domain 158 239 IPR024977 -
Gma11g00249 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Gma11g00249 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Gma11g00249 452 SMART WD40_4 218 255 IPR001680 GO:0005515
Gma11g00249 452 SMART WD40_4 175 215 IPR001680 GO:0005515
Gma11g00249 452 SMART WD40_4 389 428 IPR001680 GO:0005515
Gma11g00249 452 SMART WD40_4 346 386 IPR001680 GO:0005515
Gma11g00249 452 SMART WD40_4 301 343 IPR001680 GO:0005515
Gma11g00249 452 SMART WD40_4 259 298 IPR001680 GO:0005515
Gma11g00249 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 429 - -
Gma11g00249 452 ProSitePatterns Trp-Asp (WD) repeats signature. 415 429 IPR019775 -
Gma11g00249 452 Gene3D - 124 432 IPR015943 GO:0005515
Gma11g00249 452 SUPERFAMILY WD40 repeat-like 141 436 IPR036322 GO:0005515
Gma11g00249 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Gma11g00249 452 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 7 452 IPR033010 GO:0010997|GO:0097027|GO:1904668
Gma11g00249 452 Pfam WD domain, G-beta repeat 392 428 IPR001680 GO:0005515
Gma11g00249 452 Pfam WD domain, G-beta repeat 303 343 IPR001680 GO:0005515
Gma11g00249 452 Pfam WD domain, G-beta repeat 263 298 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00249 Gma-Chr11 1999796 2004810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00249 202 433 Miscellaneous Gene Families AT5G08390 20.000 3.13e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00249 K03364 - gmx:100797791 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00249 11 1999796 2004810 Gma11g00249 11 1999796 2004810 ECH
Gma01g02156 01 56853877 56859102 Gma11g00249 11 1999796 2004810 GST
Gma17g01236 17 10906535 10917499 Gma11g00249 11 1999796 2004810 PCT
Gma05g00484 05 4596157 4601796 Gma11g00249 11 1999796 2004810 PCT