Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02156 ATGGACGAATCATTCACTCCAGCACCACCACCTCCTCCAATGTCCCTTTCTCGGCACGATCACGTCCAACGAATGATAAACTCGAAGCGCTACAAGTCACCTTCGAAAACAATATACTCCGACAGGTTCATTCCGAGCAGATCCGGTTCCAATTTCGATCTCTTCAATCTACCTTCGCCGTCGTCGTCAGAGGACAGTTGCAGTTGCAGCCCCTACAGCACCGCGCTGCGGAGGGCCTTGTTCGGACCAGACACTCCCGATAAATTTGAAAGCCCTAATATATTCCGTTACAAAACGGAGACTCGAAAGTCTATGTATTCTCTCTCACCCACCCCTTTTACTTCCCAGGATGATCTTCTCCCTGGTTATGACAACAATCATAAACCTCCCAAGCGTCCTCGCAAGATTCCTCCCTCCTCTTTTAAGGTTTTGGACGCCCCTGCGCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCATCCAACAATATCTTGGCTGTGGCTCTGGAGAACTCTGTTTATTTGTGGAATGCTTCTAGCAGCAAGGTAACTAAATTATGCGATTTGGGGATTGACGATTCAGTTTGTTCAGTTGGCTGGGCTCCACTTGGTACCTACCTGTCTGTTGGATCAAACAGTGGTAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCAATAAGAACTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCTTGGAGTTCCTCTCTTTTGTCTTCTGGTGGCCGGGATAAAAGCATTTATCAACGAGATATACGTGCACAGGAGGATTTTGTCAGTAAACTGTCTGGGCACAAGTCAGAGgtttgtggactgaagtggtcttATGACAACCGTGAGCTAGCATCTGGAGGAAATGACAACAGGTTGCTTGTTTGGAATCAAAAGTCAACCCAGCCCGTTCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATGTAAATGGACTTCTTGCATCTGGAGGAGGAACTGTGGACCGAAACATTCGCTTTTGGAATACAACCACAAACTCACAGTTAAACTGTATCGACACTGGTAGTCAGGTTTGTAACCTTGTTTGGTCTAAAAATGTGAATGAACTCGTAAGCACACATGGTTACTCCCAGAACCAGATAATAGTTTGGAAATATCCCACCATGTCAAAGCTAGCAACGCTTACAGGCCATACTTACAGAGTTCTTTATCTTGCCATATCTCCTGACGGGCAGACTATCGTCACTGGAGCTGGAGATGAAACTCTTAGGTTCTGGAATGTATTCCCTTCGCGGAAATCACAGAATACTGAGAGTGAAATTGGAGCTTCATCTTTTGGCAGAACTATCATCAGATGA 1380 0.4514 MDESFTPAPPPPPMSLSRHDHVQRMINSKRYKSPSKTIYSDRFIPSRSGSNFDLFNLPSPSSSEDSCSCSPYSTALRRALFGPDTPDKFESPNIFRYKTETRKSMYSLSPTPFTSQDDLLPGYDNNHKPPKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSNNILAVALENSVYLWNASSSKVTKLCDLGIDDSVCSVGWAPLGTYLSVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGALAWSSSLLSSGGRDKSIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQKSTQPVLKFCEHTAAVKAIAWSPHVNGLLASGGGTVDRNIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSRKSQNTESEIGASSFGRTIIR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02156 459 SMART WD40_4 352 392 IPR001680 GO:0005515
Gma01g02156 459 SMART WD40_4 395 434 IPR001680 GO:0005515
Gma01g02156 459 SMART WD40_4 224 261 IPR001680 GO:0005515
Gma01g02156 459 SMART WD40_4 307 349 IPR001680 GO:0005515
Gma01g02156 459 SMART WD40_4 265 304 IPR001680 GO:0005515
Gma01g02156 459 SMART WD40_4 137 178 IPR001680 GO:0005515
Gma01g02156 459 SMART WD40_4 181 221 IPR001680 GO:0005515
Gma01g02156 459 Pfam Anaphase-promoting complex subunit 4 WD40 domain 163 245 IPR024977 -
Gma01g02156 459 ProSitePatterns Trp-Asp (WD) repeats signature. 421 435 IPR019775 -
Gma01g02156 459 SUPERFAMILY WD40 repeat-like 144 443 IPR036322 GO:0005515
Gma01g02156 459 Pfam WD domain, G-beta repeat 398 434 IPR001680 GO:0005515
Gma01g02156 459 Pfam WD domain, G-beta repeat 309 349 IPR001680 GO:0005515
Gma01g02156 459 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Gma01g02156 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 435 - -
Gma01g02156 459 PANTHER PROTEIN FIZZY-RELATED 1 12 459 - -
Gma01g02156 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515
Gma01g02156 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 313 IPR001680 GO:0005515
Gma01g02156 459 MobiDBLite consensus disorder prediction 111 138 - -
Gma01g02156 459 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 12 459 IPR033010 GO:0010997|GO:0097027|GO:1904668
Gma01g02156 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Gma01g02156 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Gma01g02156 459 Gene3D - 130 438 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02156 Gma-Chr1 56853877 56859102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02156 259 435 Miscellaneous Gene Families AT5G08390 23.596 1.48e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02156 K03364 - gmx:100785726 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02156 01 56853877 56859102 Gma01g02156 01 56853877 56859102 ECH
Gma01g02156 01 56853877 56859102 Gma11g00249 11 1999796 2004810 GST
Gma17g01236 17 10906535 10917499 Gma01g02156 01 56853877 56859102 PCT
Gma05g00484 05 4596157 4601796 Gma01g02156 01 56853877 56859102 PCT