Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01229 ATGGCAAAGAATGTGGGGATTCTCGCTATCGACATCTACTTCCCTCCCACCTGTATTCAGCAGGAATTGCTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACTATTGGACTTGGTCAAGATTGCATGGCGTTTTGTACAGAAGTAGAAGATGTCATCTCGATGAGTTTGACAGTAGTTTCTTCCCTTCTTGAAAAGTATGCGATTGATCCTAAACAAATTGGTCGTCTGGAAGTAGGCAGTGAGACTGTGATTGACAAAAGCAAATCCATCAAAACTTTCATCATGCAAATCTTTGAGAAATATGGAAATACCGATATTGAGGGCGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAGCTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGGCCTACTGGTGGAGCCGCTGCTGTTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCTCATGCCTATGATTTTTACAAGCCTAATCTTGCCAGTGAATATCCAGTGGTTGATGGGAAGCTTTCTCAAACTTGTTACCTTATGGCCCTTGATTCTTGCTATAATCACTTAAGTCACAAATATGAGAAACAAGAGGGAAAACAATTTTCTATTTCTGATGCAGAATACTTTGTATTTCACTCTCCATACAACAAGCTTGTACAAAAAAGTTTTGCTCGTTTGGTGTTCAATGACTTCTTGAAAAATGCCAGTTTTGTGGATGAGGCTGCCAAAGAAAAGCTGGAACCTTTTGCAACATTATCTGGTGATGAGAGCTATCAAAGCCGGGATCTAGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCAATACGATGCAAAGGTGCAGCCAACCACCTTGATACCGAAACAAGTTGGCAACATGTACACCGCATCTCTTTATGCAGCCTTTATTTCACTTATTCACAACAAGCATAGCACATTGGATGGTAAGAGGGTAATATTGTTCTCGTATGGAAGTGGCTTAACTTCCACAATGTTCTCTTTGCTATTACGTGAAGGTCAACATCCATTTAGCCTGTCAAACATTGATAAAATGATGGATGTTGCTGGGAAATTGAAGTCAAGACATGAGTTTCCACCAGAGAAATTTGTTGAAACCATGAAGCTAATGGAACATAGGTATGGTGGCAAGGAGTTTGTAACAAGCAAGGACACCAGCCTTTTATCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATAGGAGATTCTATGCAAAGAAAACTAGTGAAAATGGTTTGGTCACCAATGGTCACTGA 1383 0.4172 MAKNVGILAIDIYFPPTCIQQELLEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTVVSSLLEKYAIDPKQIGRLEVGSETVIDKSKSIKTFIMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPISFESKLRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNHLSHKYEKQEGKQFSISDAEYFVFHSPYNKLVQKSFARLVFNDFLKNASFVDEAAKEKLEPFATLSGDESYQSRDLEKASQQVAKPQYDAKVQPTTLIPKQVGNMYTASLYAAFISLIHNKHSTLDGKRVILFSYGSGLTSTMFSLLLREGQHPFSLSNIDKMMDVAGKLKSRHEFPPEKFVETMKLMEHRYGGKEFVTSKDTSLLSPGTFYLTEVDSMYRRFYAKKTSENGLVTNGH 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01229 460 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Gma17g01229 460 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Gma17g01229 460 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Gma17g01229 460 Gene3D - 1 451 IPR016039 GO:0016746
Gma17g01229 460 CDD init_cond_enzymes 4 368 - -
Gma17g01229 460 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Gma17g01229 460 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Gma17g01229 460 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Gma17g01229 460 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01229 Gma-Chr17 10830731 10836106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01229 K01641 - gmx:100780554 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01229 17 10830731 10836106 Gma17g01229 17 10830731 10836106 ECH
Gma17g01229 17 10830731 10836106 Gma05g00476 05 4522558 4527133 GST
Gma17g01229 17 10830731 10836106 Gma01g02163 01 56914799 56920041 PCT
Gma17g01229 17 10830731 10836106 Gma11g00245 11 1953801 1959527 PCT