Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00476 atggtggttgtggcgggtttagctggtgacaaagttaagagcaactcaactggtttagtgacaaccggtggtgatactcatggcggcagactgtacgacgaactaggggagtttcaaactgaagatcgtcgcccatctagcatcctttcctcatTAGTTTCTTCACTTCTTGAAAAGTATGCGATTGATCCTAAACAAATTGGTCGTCTGGAAAAATATGGAAATACCAATATTGAGGGCGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCCTTGTTCAATTGTGTCAATTGGGTCTATGCTGAAGGACCTGCTCGGCATACTGGTGGAGCCGCTGCTGTTGCCATGCTAATTGGTCCCAATGCTCCCATTGCTTTTGAAAGCAAATTGAGGGGAAGTCAATGGCTCATGCCTATGATTTTTACAAGCCTAATCTTGCCAGTTGTTGATGGGAAGCTTTCTCAAACTTGTTACCTTATGGCCCTTGATTCTTGCTATAATCACTTAAGTCACAAATATGATATACAAGAGGGAATGCAATTTTCTATTTCTGATGCTGAATACTTTGTATTTCACTCTCCATATGACAAGGTGTTCTATGACTTCTTGAAAAATCCCAGTTTTGTGGATGAGGCTGCCAAAGAAAAGCTGAAACCTTTTGCAACATTATCTGGTGATGAGCCGGGATCTAGAAAAGATTTGAGAGCATCCCAACAACTTGCAAAGCCTCAATACGATGCAAAGGTGCATCCAACCACCTTGATATACCGAAACAATGATGTTTCTAGCAAATTGAAGTCAAGGCTTGAGTTTCCACCAGAGAAATTTGTTGAAACCATGAAGCCAGGAAGTCAACTGTGCTTAGCAACATTTAGAAGGTTGTTTTTGTTTGCAATAGTTTCTTCTTAA 915 0.3322 MVVVAGLAGDKVKSNSTGLVTTGGDTHGGRLYDELGEFQTEDRRPSSILSSLVSSLLEKYAIDPKQIGRLEKYGNTNIEGVDSTNACYGGTAALFNCVNWVYAEGPARHTGGAAAVAMLIGPNAPIAFESKLRGSQWLMPMIFTSLILPVVDGKLSQTCYLMALDSCYNHLSHKYDIQEGMQFSISDAEYFVFHSPYDKVFYDFLKNPSFVDEAAKEKLKPFATLSGDEPGSRKDLRASQQLAKPQYDAKVHPTTLIYRNNDVSSKLKSRLEFPPEKFVETMKPGSQLCLATFRRLFLFAIVSS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00476 304 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 71 102 IPR013528 -
Gma05g00476 304 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 3 259 - -
Gma05g00476 304 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 75 90 IPR000590 GO:0004421|GO:0008299
Gma05g00476 304 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 3 259 - -
Gma05g00476 304 SUPERFAMILY Thiolase-like 148 283 IPR016039 GO:0016746
Gma05g00476 304 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 148 261 IPR013746 GO:0004421|GO:0006084|GO:0010142
Gma05g00476 304 Gene3D - 34 261 IPR016039 GO:0016746
Gma05g00476 304 SUPERFAMILY Thiolase-like 55 123 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00476 Gma-Chr5 4522558 4527133 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00476 K01641 - gmx:100780554 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00476 05 4522558 4527133 Gma05g00476 05 4522558 4527133 ECH
Gma17g01229 17 10830731 10836106 Gma05g00476 05 4522558 4527133 GST
Gma05g00476 05 4522558 4527133 Gma01g02163 01 56914799 56920041 PCT
Gma05g00476 05 4522558 4527133 Gma11g00245 11 1953801 1959527 PCT