Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00245 ATGGCAAAGAATGTGGGGATCCTTGCCATTGACATCTACTTCCCTCCCGCTTGCGTTCAGCAGGAAGCATTGGAGACTCATGATGGTGCCAGTAAAGGGAAGTATACCATTGGTCTTGGACAAGATTGCATGTCATTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAATATGAGATTGATCCTAAGCTAGTTGGTCGTCTGGAAGTTGGAAGCGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTCGAGAAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTCTGTTTAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTTTATGCTGAAGGGCCTGCTCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGTCTCATGTTTATGATTTTTACAAGCCTAATCTTGCCAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTGTTGATTCTTGCTATAAGAATTTCTGTCACAAGTATGAGAAATTCGAGGGAAAACAATTTTCTCTTTCTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAGAGTTTTGCTCGGTTGGTTTTCAATGACTTCTTAATGAATTCCAGCTCTGTAGATGAGGTTGCCAAAGAAAAACTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCAAGTAGCAAAGCCTCTATATGATCAGAAGGTACAACCAACTACTCTGATTCCAAAGCAAGTTGGAAACATGTACACGGCGTCTCTTTATGCAGCATTTGCCTCCCTTATTCACAACAAAAATAGCACATTGGCAGGTAAGAGGGTGATATTATTCTCATACGGTAGTGGCTTAACTGCCACCATGTTTTCGTTGCAATTACGAGACAGTCAACATCCGTTTAGCTTGTCAAACATTGCTAGAGTGATGGATGTCGATGGAAAATTGAAGTCAAGACATGAGTTTCCCCCAGAGGAGTTTGTTGAAAACCTGAAGCTAATGGAGCATAGGTATGGTGGAAAGGAATTTGTGACAAGCAAGGACACTAGCCTTTTATCTCCAGGCACATTCTACCTCACTGAAGTTGACTCCATGTATCGGAGATTCTATTCAAAGAAAACTAAAGAGAGCAGTTTGACTCCCGCTGAGAACGGTGTGattgctaatggcgttgctaatggcattgctaatggcCACTGA 1428 0.4111 MAKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYEIDPKLVGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYKNFCHKYEKFEGKQFSLSDAEYFVFHSPYNKLVQKSFARLVFNDFLMNSSSVDEVAKEKLGPFATLSGDESYQSRDLEKASQQVAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKNSTLAGKRVILFSYGSGLTATMFSLQLRDSQHPFSLSNIARVMDVDGKLKSRHEFPPEEFVENLKLMEHRYGGKEFVTSKDTSLLSPGTFYLTEVDSMYRRFYSKKTKESSLTPAENGVIANGVANGIANGH 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00245 475 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Gma11g00245 475 Gene3D - 1 451 IPR016039 GO:0016746
Gma11g00245 475 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Gma11g00245 475 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Gma11g00245 475 CDD init_cond_enzymes 4 368 - -
Gma11g00245 475 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Gma11g00245 475 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Gma11g00245 475 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Gma11g00245 475 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00245 Gma-Chr11 1953801 1959527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00245 K01641 - gmx:100782595 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00245 11 1953801 1959527 Gma11g00245 11 1953801 1959527 ECH
Gma01g02163 01 56914799 56920041 Gma11g00245 11 1953801 1959527 GST
Gma17g01229 17 10830731 10836106 Gma11g00245 11 1953801 1959527 PCT
Gma05g00476 05 4522558 4527133 Gma11g00245 11 1953801 1959527 PCT