Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01184 ATGGAAGCTGTGTGTGGAAGTGGAAGCAGTGTTTGGGTCACATCCTCCCTTACACGCTCACCCAAGATCACACTCCCTCTATTCCGCGCCAGTTACCAGCACCTAACAGCATTTCCTTCACAATCCCTTCTTTTCTCCTATCACCCTTCTCGCTATGCTAATGCTAGAACCCTCCGCGCCAGAACCTCCTCCAAACCCATTTTCCTTCCCCACTTAATTGCTTCTCTGGAACAAGTTGACCAGACTTACATTATGGTGAAGCCCGACGGCGTCCAACGTGGCCTCGTGGGAGAAATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTAACTGGCTTGAAGCTCTTCCAGTGCTCAAAGGAATTGGCCGAGGAGCATTACAAGGACCTAAAACAAAAGTCATTTTTCCCTAAGCTGATTGACTATATTACTTCAGGTCCTGTTGTGTGTATGGCTTGGGAGGGTGTTGGAGTAGTGGCATCGGCACGCAAGCTTATAGGGGCTACAGATCCTCTTCAAGCTGAACCAGGCACAATAAGAGGAGACCTTGCTGTTCAAACAGGAAGGAATGTTGTTCATGGCAGTGACAGCCCTGAGAATGGCAAGCGTGAAATAGCTCTATGGTTCAAGGAAGGCGAAGTATGCGATTGGACCCCAGTCCAATCACCATGGCTGAGAGAATAA 684 0.4825 MEAVCGSGSSVWVTSSLTRSPKITLPLFRASYQHLTAFPSQSLLFSYHPSRYANARTLRARTSSKPIFLPHLIASLEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLKQKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIALWFKEGEVCDWTPVQSPWLRE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01184 227 CDD NDPk_I 81 209 - -
Gma17g01184 227 PRINTS Nucleoside diphosphate kinase signature 82 104 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma17g01184 227 PRINTS Nucleoside diphosphate kinase signature 126 145 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma17g01184 227 PRINTS Nucleoside diphosphate kinase signature 146 163 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma17g01184 227 PRINTS Nucleoside diphosphate kinase signature 167 183 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma17g01184 227 PRINTS Nucleoside diphosphate kinase signature 190 209 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma17g01184 227 ProSitePatterns Nucleoside diphosphate kinases active site. 190 198 IPR023005 -
Gma17g01184 227 SMART ndk_5 79 216 IPR034907 -
Gma17g01184 227 Pfam Nucleoside diphosphate kinase 81 213 IPR034907 -
Gma17g01184 227 Gene3D - 75 227 IPR036850 -
Gma17g01184 227 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 30 226 - -
Gma17g01184 227 SUPERFAMILY Nucleoside diphosphate kinase, NDK 80 225 IPR036850 -
Gma17g01184 227 Hamap Nucleoside diphosphate kinase [ndk]. 79 214 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma17g01184 227 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 30 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01184 Gma-Chr17 10369425 10373710 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01184 K00940 - gmx:100811753 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01184 17 10369425 10373710 Gma17g01184 17 10369425 10373710 ECH
Gma17g01184 17 10369425 10373710 Gma05g00426 05 4033922 4037989 GST
Gma17g01184 17 10369425 10373710 Gma01g00267 01 3046769 3051053 PCT