Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00426 ATGGAAGCTGTGTGTGGAAGTGTTTGGGTCACATCCTCTCTTCCACGCTCACCCAAGTCCACTCTCTCTCTATTCCGCTCTACTCATCAACACCTAACAGCATTTCCTTCACAATCCCATCTTTTCTTATATCACCCTCCTCCCTATGCTAATGCTAAAACCCTCCGCGCCAGAACCTCCTCCAAACCCGCCATTTTCCTTCCCCACTTAATTGCTTCTCTGGAACAAGTTGACCAGACTTACATAATGGTCAAGCCCGACGGCGTGCAACGTGGCCTCGTGGGAGAAATTATTTCTAGGTTTGAGAAGAAAGGGTTTAAGTTAACTGGCTTGAAGCTCTTCCAGTGCTCAAAGGAATTGGCTGAGGAGCATTACAAGGACCTAAAACAAAAGTCATTCTTCCCCAAGCTGATTGACTATATTACTTCAGGTCCTGTTGTGTGTATGGCTTGGGAGGGTGTTGGGGTAGTCGCATCGGCCCGTAAGCTTATAGGGGCTACAGATCCTCTTCAAGCTGAACCAGGCACAATAAGAGGAGACCTTGCTGTTCAGACAGGAAGGAATGTTGTTCATGGCAGTGACAGTCCTGAGAATGGCAAGCGTGAAATAGCTCTATGGTTCAAGGAAGGCGAAGTATGCGAATGGACCCCAGTCCAAGCACCATGGCTGAGAGAATAA 678 0.4794 MEAVCGSVWVTSSLPRSPKSTLSLFRSTHQHLTAFPSQSHLFLYHPPPYANAKTLRARTSSKPAIFLPHLIASLEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLKQKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIALWFKEGEVCEWTPVQAPWLRE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00426 225 PRINTS Nucleoside diphosphate kinase signature 80 102 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma05g00426 225 PRINTS Nucleoside diphosphate kinase signature 124 143 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma05g00426 225 PRINTS Nucleoside diphosphate kinase signature 144 161 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma05g00426 225 PRINTS Nucleoside diphosphate kinase signature 165 181 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma05g00426 225 PRINTS Nucleoside diphosphate kinase signature 188 207 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma05g00426 225 SMART ndk_5 77 214 IPR034907 -
Gma05g00426 225 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 24 224 - -
Gma05g00426 225 CDD NDPk_I 79 207 - -
Gma05g00426 225 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 24 224 - -
Gma05g00426 225 Hamap Nucleoside diphosphate kinase [ndk]. 77 212 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma05g00426 225 Gene3D - 73 225 IPR036850 -
Gma05g00426 225 SUPERFAMILY Nucleoside diphosphate kinase, NDK 78 223 IPR036850 -
Gma05g00426 225 Pfam Nucleoside diphosphate kinase 79 211 IPR034907 -
Gma05g00426 225 ProSitePatterns Nucleoside diphosphate kinases active site. 188 196 IPR023005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00426 Gma-Chr5 4033922 4037989 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00426 K00940 - gmx:100500478 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00426 05 4033922 4037989 Gma05g00426 05 4033922 4037989 ECH
Gma17g01184 17 10369425 10373710 Gma05g00426 05 4033922 4037989 GST
Gma05g00426 05 4033922 4037989 Gma01g00267 01 3046769 3051053 PCT