Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00824 ATGAAACTCATACCTGTCAGACATTCTGCAATGGGTTCCATTTGGATGTGCCATTTGTTTCTGTTATTGTCCATACTTTGTACTACTTTTATTGCAACTATGGCCAATAATGCAACAGATTCCTACTTGCTTCTCAAAGTTAAATCAGAATTGGTAGATCCATTAGGGGCCTTTAGCAACTGGTTTCCAACAACTCAATTCTGCAACTGGAATGGAATAACATGTGCAGTTGATCAGGAACATGTTATAGGCCTCAATCTGTCTGGTTCAGGAATATCAGGTTCTATTTCAGTTGAGTTGGGTAACTTCACTTCTCTTCAAACACTTGATTTGTCTTCAAATTCTCTTTCTGGCTCCATCCCTTCAGAACTGGGTCAGCTTCAAAATCTAAGAATATTGCAACTATACTCAAATGATCTCTCTGGGAACATTCCTTCAGAGATAGGTAACTTGAGGAAGTTGCAAGTTCTTAGAATAGGAGACAACATGCTGACAGGTGAAATTCCACCTAGTGTTGCCAATATGAGTGAATTGAAAGTGTTGGCTCTAGGCTACTGCCACTTAAATGGAAGCATACCCTTTGGAATTGGTAAATTGAAGCATCTAATATCTCTTGATGTACAAATGAACAGCATTAATGGCCACATACCTGAAGAGATTGAAGGCTGTGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGAGACTTACCTTCCTCTATGGGGTCTCTTAAATCTTTGAAAATTCTGAATCTGGCCAATAACAGTTTATCTGGATCAATTCCTACAGCTTTGAGTCATCTTTCTAACTTGACATACCTGAATTTGCTAGGAAACAAACTACATGGAGAAATTCCTTCTGAGCTTAATAGTCTGATTCAGATGCAGAAGCTAGACTTATCCAAAAACAACCTCTCTGGATCAATACCTCTTCTTAATGTAAAATTGCAAAGTCTTGAAACTCTTGTTTTGTCTGATAATGCTCTGACAGGTAGCATTCCAAGTAACTTCTGCCTCAGAGGTTCAAAGCTTCAGCAACTTTTCTTGGCTAGAAACATGCTCTCTGGCAAGTTTCCCTTGGAGCTACTCAACTGCTCCTCAATCCAACAGTTGGACCTTTCTGATAACAGCTTTGAAGGAAAACTTCCTTCCATCTTGGACAAACTGCAGAACCTTACAGATCTTGTGCTCAACAACAACAGCTTTGTTGGATCTCTACCTCCTGAAATTGGCAACATTAGTAGCTTGGAAAATCTTTTCCTATTTGGTAACTTCTTCAAAGGTAAAATTCCATTGGAGATTGGAAGGCTGCAGAGGTTGAGCTCCATTTACCTCTATGACAACCAGATGTCTGGACTTATACCAAGGGAGTTAACAAACTGCACAAGCTTAAAGGAAATTGACTTCTTTGGAAATCACTTCACAGGGCCAATTCCAGAAACTATAGGTAAGCTCAAGGACTTAGTTGTTCTTCATCTTAGGCAGAATGACTTGTCTGGTCCAATCCCACCAAGCATGGGATACTGTAAAAGCCTTCAGATATTGGCCTTAGCAGATAACATGTTGTCTGGTTCCATTCCACCCACTTTCAGTTACCTCTCAGAACTCACTAAAATTACCCTTTACAATAACTCCTTTGAAGGACCTATCCCTCATTCACTCTCCTCTCTTAAAAGCCTCAAAATCATAAACTTCTCACACAACAAGTTCAGTGGAAGTTTCTTTCCTCTCACTTGTTCAAATTCCCTGACCCTTCTGGACCTAACTAACAACAGCTTCTCAGGTCCCATCCCTTCCACTCTAGCCAATTCTAGAAACCTCGGCCGTCTCAGACTTGGACAGAATTATCTCACAGGAACCATTCCTTCTGAATTTGGCCAGCTTACTGAGCTCAACTTTCTTGATCTATCATTCAACAATTTAACAGGAGAAGTTCCACCTCAACTCTCAAACTCCAAGAAAATGGAACACATCTTGATGAATAACAACAGGTTGAGTGGTGAAATATCTGATTGGTTGGGAAGCTTACAAGAACTCGGTGAACTAGATCTCTCATACAATAACTTCAGTGGTAAGGTACCTTCTGAGCTTGGTAACTGCTCAAAACTACTCAAGCTTTCTCTCCATCACAACAATCTCTCTGGTGAAATCCCCCAAGAGATTGGAAACCTCACTTCCCTCAATGTCCTCAATTTGCAAAGGAACGGCTTCTCCGGCCTAATTCCTCCGACAATTCAGCAATGCACAAAGCTGTATGAGCTCCGGCTCTCAGAAAACTTGTTAACAGGTGTTATACCAGTTGAGCTAGGAGGGCTAGCTGAGTTGCAAGTTATATTGGACTTGAGTAAAAAtctcttcactgGATTCCCACTAAGCACATTCCTGAACAATAGCGGCTTGTGTGGTCCACCTTTGAGATCATGCTCCGAATCCATGGTGCAGGGAAAAATTCAGCTATCAAACACACAAGTGGCAATAATCATTGTGGCCATTGTCTTTACTTCCACAGTGATATGCTTAGTGATGCTGTATATAATGCTCAGGATCTGGTGCAACTGGAGAAAAGTGACAATTTCAAGTGCAGAGGGTGGTGGCACTGTTGGTCACAAGACAAGAAATGGAGAGTATTGGAATATGAATTCCTTTGGGTTCATCCCTTCACCAGATAAGCAGAATTCAGCAACAACAACTTCATTCTACAATCTCAAAATGGAAACAATGGAAAATACAAATATGTAA 2748 0.405 MKLIPVRHSAMGSIWMCHLFLLLSILCTTFIATMANNATDSYLLLKVKSELVDPLGAFSNWFPTTQFCNWNGITCAVDQEHVIGLNLSGSGISGSISVELGNFTSLQTLDLSSNSLSGSIPSELGQLQNLRILQLYSNDLSGNIPSEIGNLRKLQVLRIGDNMLTGEIPPSVANMSELKVLALGYCHLNGSIPFGIGKLKHLISLDVQMNSINGHIPEEIEGCEELQNFAASNNMLEGDLPSSMGSLKSLKILNLANNSLSGSIPTALSHLSNLTYLNLLGNKLHGEIPSELNSLIQMQKLDLSKNNLSGSIPLLNVKLQSLETLVLSDNALTGSIPSNFCLRGSKLQQLFLARNMLSGKFPLELLNCSSIQQLDLSDNSFEGKLPSILDKLQNLTDLVLNNNSFVGSLPPEIGNISSLENLFLFGNFFKGKIPLEIGRLQRLSSIYLYDNQMSGLIPRELTNCTSLKEIDFFGNHFTGPIPETIGKLKDLVVLHLRQNDLSGPIPPSMGYCKSLQILALADNMLSGSIPPTFSYLSELTKITLYNNSFEGPIPHSLSSLKSLKIINFSHNKFSGSFFPLTCSNSLTLLDLTNNSFSGPIPSTLANSRNLGRLRLGQNYLTGTIPSEFGQLTELNFLDLSFNNLTGEVPPQLSNSKKMEHILMNNNRLSGEISDWLGSLQELGELDLSYNNFSGKVPSELGNCSKLLKLSLHHNNLSGEIPQEIGNLTSLNVLNLQRNGFSGLIPPTIQQCTKLYELRLSENLLTGVIPVELGGLAELQVILDLSKNLFTGFPLSTFLNNSGLCGPPLRSCSESMVQGKIQLSNTQVAIIIVAIVFTSTVICLVMLYIMLRIWCNWRKVTISSAEGGGTVGHKTRNGEYWNMNSFGFIPSPDKQNSATTTSFYNLKMETMENTNM 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00824 915 Pfam Leucine rich repeat 729 788 IPR001611 GO:0005515
Gma17g00824 915 Pfam Leucine rich repeat 233 284 IPR001611 GO:0005515
Gma17g00824 915 SUPERFAMILY L domain-like 353 650 - -
Gma17g00824 915 SUPERFAMILY RNI-like 85 406 - -
Gma17g00824 915 SUPERFAMILY L domain-like 584 809 - -
Gma17g00824 915 Pfam Leucine rich repeat N-terminal domain 39 75 IPR013210 -
Gma17g00824 915 Gene3D Ribonuclease Inhibitor 37 194 IPR032675 -
Gma17g00824 915 SMART LRR_typ_2 727 750 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 199 223 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 488 512 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 271 295 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 247 270 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 151 175 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 775 799 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 319 343 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 392 416 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 679 703 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 103 127 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 440 463 IPR003591 -
Gma17g00824 915 SMART LRR_typ_2 631 655 IPR003591 -
Gma17g00824 915 PANTHER LEUCINE RICH REPEAT KINASE 2 319 508 - -
Gma17g00824 915 PANTHER LEUCINE RICH REPEAT KINASE 2 585 858 - -
Gma17g00824 915 PANTHER LEUCINE RICH REPEAT KINASE 2 82 279 - -
Gma17g00824 915 PANTHER LEUCINE RICH REPEAT KINASE 2 127 340 - -
Gma17g00824 915 PANTHER LEUCINE RICH REPEAT KINASE 2 392 603 - -
Gma17g00824 915 PANTHER LEUCINE RICH REPEAT KINASE 2 488 694 - -
Gma17g00824 915 Pfam Leucine Rich Repeat 105 125 IPR001611 GO:0005515
Gma17g00824 915 Gene3D Ribonuclease Inhibitor 289 386 IPR032675 -
Gma17g00824 915 Gene3D Ribonuclease Inhibitor 387 482 IPR032675 -
Gma17g00824 915 Gene3D Ribonuclease Inhibitor 579 815 IPR032675 -
Gma17g00824 915 Gene3D Ribonuclease Inhibitor 195 288 IPR032675 -
Gma17g00824 915 Gene3D Ribonuclease Inhibitor 483 578 IPR032675 -
Gma17g00824 915 PRINTS Leucine-rich repeat signature 631 644 - -
Gma17g00824 915 PRINTS Leucine-rich repeat signature 106 119 - -
Gma17g00824 915 ProSiteProfiles Leucine-rich repeat profile. 105 127 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00824 Gma-Chr17 6949553 6952522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00824 53 832 Receptor kinase-like Gene Family AT5G46330 35.914 3.56e-129 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00824 - - gmx:100779315 1654.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00824 17 6949553 6952522 Gma17g00824 17 6949553 6952522 ECH
Gma17g00824 17 6949553 6952522 Gma05g00371 05 3476030 3478948 GST
Gma17g00824 17 6949553 6952522 Gma04g01796 04 47998793 48001764 PCT
Gma04g01796 04 47998793 48001764 Gma17g00824 17 6949553 6952522 PCT