Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01796 ATGGATTCCATTTACATCTGTCATTTCATTCTACTACTGACCATAGTGTGCACTGTTGTTGTTGCAACTCTAGGAGATAACACAACAGAATCCTACTGGCTTCTAAGAATTAAATCAGAACTGGTTGATCCATTAGGAGCCCTGAGAAACTGGTCTCCAACAACAACTCAAATTTGTAGCTGGAATGGACTAACATGTGCACTTGATCAGGCACGTGTTGTAGGCCTTAATTTGTCTGGCTCAGGACTATCAGGTTCCATTTCAGGAGAGTTCAGCCACCTCATTTCTCTTCAATCACTTGATTTGTCTTCAAACTCCCTCACAGGCTCAATCCCTTCTGAACTTGGGAAGCTTCAAAATCTAAGAACACTTCTGCTTTACTCAAATTATCTCTCTGGTGCCATTCCTAAAGAGATAGGTAATTTGAGCAAGTTGCAAGTTCTTAGACTAGGAGATAACATGTTGGAAGGTGAAATAACACCTAGTATTGGCAACTTGAGTGAGTTGACAGTGTTTGGTGTAGCCAACTGCAACTTAAATGGAAGCATACCTGTTGAGGTTGGTAAGTTGAAGAATCTTGTGTCTCTTGATTTGCAAGTGAACAGTCTTAGTGGTTACATACCTGAAGAGATTCAAGGCTGTGAAGGGCTCCAAAATTTTGCAGCATCAAACAACATGCTTGAAGGAGAAATACCCTCCTCTTTGGGGTCTCTCAAATCATTGAGAATTCTGAACCTGGCCAATAACACTCTATCAGGATCAATTCCTACCTCTTTGAGTCTTCTCTCCAATTTGACATACCTGAATTTGCTTGGAAACATGTTAAATGGTGAAATTCCTTCAGAGCTTAACAGTTTGAGCCAGCTACAGAAGCTTGACTTATCCAGAAACAGCCTTTCTGGACCACTAGCCCTCCTCAATGTCAAATTACAGAATCTTGAAACTATGGTTCTGTCTGATAATGCTTTAACAGGTAGTATTCCATATAACTTCTGCCTCAGAGGTTCTAAACTTCAGCAACTGTTCTTAGCTAGGAATAAGCTTTCTGGAAGATTTCCCTTGGAGCTTCTCAACTGCAGCTCAATCCAACAGGTGGACCTTTCTGATAACAGTTTTGAAGGTGAACTTCCATCAAGCCTGGACAAGCTACAGAACCTCACAGATCTTGTGCTCAACAACAACAGCTTCAGTGGATCTCTACCTCCAGGAATTGGAAACATTAGTAGCTTGAGAAGCCTTTTCTTGTTTGGTAACTTTTTCACAGGAAAACTCCCTGTGGAGATTGGAAGGCTTAAGAGGTTGAACACCATTTACCTCTATGATAACCAGATGTCTGGACCTATACCAAGAGAGTTAACAAACTGCACAAGATTAACTGAAATTGACTTCTTTGGAAACCATTTTTCTGGTCCCATTCCAAAGACTATAGGTAAGCTAAAGGACTTAACTATTCTCCATTTAAGGCAAAATGATCTGTCAGGTCCAATCCCACCAAGCATGGGGTACTGTAAAAGGCTTCAGTTATTGGCCTTAGCAGATAACAAGTTGTCAGGTTCCATACCCCCCACATTCAGTTACCTTTCACAAATTAGAACCATTACCCTTTACAACAACTCCTTCGAAGGACCACTACCCGATTCCCTCTCTCTTCTTAGAAACCTTAAAATCATAAACTTTTCCAATAACAAGTTCAGTGGAAGTATCTTTCCTCTGACTGGTTCAAATTCTCTCACTGTTTTGGACTTGACAAACAACAGCTTCTCAGGTTCCATCCCTTCTATTCTAGGCAACTCCAGAGATCTCACGCGTCTCAGACTTGGAAACAATTATCTCACAGGAACCATTCCTTCTGAACTTGGCCACCTCACTGAGCTAAACTTCCTTGATTTGTCATTCAACAACTTGACAGGACATGTGCTACCTCAACTCTCAAACTGCAAGAAAATTGAACACCTTCTACTGAATAATAACAGATTGAGCGGGGAAATGTCGCCTTGGCTGGGAAGCTTACAAGAACTTGGTGAGCTGGATCTCTCATTCAACAACTTTCATGGAAGGGTTCCTCCTGAGCTTGGTGGCTGCTCAAAGTTGCTTAAGCTTTTTCTCCATCACAACAATCTCTCGGGTGAAATCCCGCAAGAGATTGGAAACCTTACTTCACTCAATGTCTTCAACTTGCAAAAGAATGGTCTCTCTGGCCTCATTCCATCAACAATTCAGCAATGCACCAAGCTGTATGAGATAAGGCTCTCAGAGAACTTCCTCTCAGGTACTATACCAGCTGAACTAGGAGGGGTTACTGAGTTACAAGTCATATTGGACTTGAGTAGAAACCACTTTTCTGGTGAGATTCCATCATCTCTTGGAAATCTCATGAAGCTAGAAAGACTTGATCTTTCCTTTAACCATCTTCAAGGACAAGTTCCTCCTTCACTTGGTCAACTTACCAGCCTGCATATGCTAAATCTCTCATATAACCATCTTAATGGCCTCATTCCCTCAACCTTTTCAGGGTTCCCATTAAGCTCCTTTCTGAACAATGACCACTTGTGTGGCCCTCCACTAACATTGTGCTTGGAAGCTACGGGTAAGGAGCGAATGCAGCTATCAAACGCACAAGTAGCAGCAATCATAGTAGCCATTGTCCTTACTTCCACCCTGATATGCTTAGTAATGTTGTATATAATGTTGAGAATCTGGTGCAACTGGATAAAGGTAGCTGTTTCAAGTGAAGATGGTGGCATGGTTGAGCAGCAGAAGACAAGAAATGGAGAGTACTGGAATATGAATTCTCCTGAGTTGTTTCCTTCACCAGATAAACAAATTTCGCCAACAATTTGCATTTGCAGTCTCAAAATTGATGCAGAAGCCCAGGAAAATACCTTGGTCAGATAA 2895 0.4162 MDSIYICHFILLLTIVCTVVVATLGDNTTESYWLLRIKSELVDPLGALRNWSPTTTQICSWNGLTCALDQARVVGLNLSGSGLSGSISGEFSHLISLQSLDLSSNSLTGSIPSELGKLQNLRTLLLYSNYLSGAIPKEIGNLSKLQVLRLGDNMLEGEITPSIGNLSELTVFGVANCNLNGSIPVEVGKLKNLVSLDLQVNSLSGYIPEEIQGCEGLQNFAASNNMLEGEIPSSLGSLKSLRILNLANNTLSGSIPTSLSLLSNLTYLNLLGNMLNGEIPSELNSLSQLQKLDLSRNSLSGPLALLNVKLQNLETMVLSDNALTGSIPYNFCLRGSKLQQLFLARNKLSGRFPLELLNCSSIQQVDLSDNSFEGELPSSLDKLQNLTDLVLNNNSFSGSLPPGIGNISSLRSLFLFGNFFTGKLPVEIGRLKRLNTIYLYDNQMSGPIPRELTNCTRLTEIDFFGNHFSGPIPKTIGKLKDLTILHLRQNDLSGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLSQIRTITLYNNSFEGPLPDSLSLLRNLKIINFSNNKFSGSIFPLTGSNSLTVLDLTNNSFSGSIPSILGNSRDLTRLRLGNNYLTGTIPSELGHLTELNFLDLSFNNLTGHVLPQLSNCKKIEHLLLNNNRLSGEMSPWLGSLQELGELDLSFNNFHGRVPPELGGCSKLLKLFLHHNNLSGEIPQEIGNLTSLNVFNLQKNGLSGLIPSTIQQCTKLYEIRLSENFLSGTIPAELGGVTELQVILDLSRNHFSGEIPSSLGNLMKLERLDLSFNHLQGQVPPSLGQLTSLHMLNLSYNHLNGLIPSTFSGFPLSSFLNNDHLCGPPLTLCLEATGKERMQLSNAQVAAIIVAIVLTSTLICLVMLYIMLRIWCNWIKVAVSSEDGGMVEQQKTRNGEYWNMNSPELFPSPDKQISPTICICSLKIDAEAQENTLVR 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01796 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 383 762 - -
Gma04g01796 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 21 406 - -
Gma04g01796 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 307 689 - -
Gma04g01796 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 467 896 - -
Gma04g01796 964 Gene3D Ribonuclease Inhibitor 379 455 IPR032675 -
Gma04g01796 964 Gene3D Ribonuclease Inhibitor 456 526 IPR032675 -
Gma04g01796 964 SMART LRR_typ_2 670 694 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 190 213 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 142 166 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 815 838 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 622 646 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 94 118 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 479 503 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 286 307 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 238 262 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 383 407 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 718 741 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 310 334 IPR003591 -
Gma04g01796 964 SMART LRR_typ_2 791 814 IPR003591 -
Gma04g01796 964 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Gma04g01796 964 Gene3D Ribonuclease Inhibitor 26 180 IPR032675 -
Gma04g01796 964 Gene3D Ribonuclease Inhibitor 527 862 IPR032675 -
Gma04g01796 964 PRINTS Leucine-rich repeat signature 97 110 - -
Gma04g01796 964 PRINTS Leucine-rich repeat signature 286 299 - -
Gma04g01796 964 SUPERFAMILY RNI-like 365 751 - -
Gma04g01796 964 ProSiteProfiles Leucine-rich repeat profile. 240 262 IPR001611 GO:0005515
Gma04g01796 964 Pfam Leucine rich repeat 772 828 IPR001611 GO:0005515
Gma04g01796 964 SMART LRR_sd22_2 190 216 - -
Gma04g01796 964 SMART LRR_sd22_2 94 123 - -
Gma04g01796 964 SMART LRR_sd22_2 286 315 - -
Gma04g01796 964 SMART LRR_sd22_2 142 168 - -
Gma04g01796 964 SMART LRR_sd22_2 622 645 - -
Gma04g01796 964 Gene3D Ribonuclease Inhibitor 278 378 IPR032675 -
Gma04g01796 964 Gene3D Ribonuclease Inhibitor 181 277 IPR032675 -
Gma04g01796 964 Pfam Leucine rich repeat N-terminal domain 33 66 IPR013210 -
Gma04g01796 964 SUPERFAMILY L domain-like 30 328 - -
Gma04g01796 964 SUPERFAMILY L domain-like 772 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01796 Gma-Chr4 47998793 48001764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01796 43 858 Receptor kinase-like Gene Family AT5G46330 33.779 3.47e-120 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01796 - - gmx:100802757 1844.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01796 04 47998793 48001764 Gma04g01796 04 47998793 48001764 ECH
Gma17g00824 17 6949553 6952522 Gma04g01796 04 47998793 48001764 PCT
Gma05g00371 05 3476030 3478948 Gma04g01796 04 47998793 48001764 PCT
Gma04g01796 04 47998793 48001764 Gma17g00824 17 6949553 6952522 PCT
Gma04g01796 04 47998793 48001764 Gma05g00371 05 3476030 3478948 PCT