Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00816 ATGAAGGCAACACTACGGTACTTAGCAGGACTTGCTGGGCCAAGTGGTTTCGGCTCAAATTCAACAGCTGAGCAAGTCACTCAAGATTGCTCTTCCTTGCTCCCTTCAAATCTAACCGCTCTCATCACTGGTGGGACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTAAGGATTGTGATTGGTGCCAGGGACTTGAGAAAGGCCAAGGAAGTGAGAGAGAAAATCCAAAAGGAAAGTCCCCATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCAGAGTTTTTAGCTTTAGACCTGCCCCTTAATATTCTCATGCAAAAGTATATTCATGAAGGGCTAAAAGTTAGAGTTATTGTTTTCCACAGAAACAATGCAGGAATGTACTCTCAAAACTTGGAGTTCTCCGAAGAGAAAATTGAAATGACATTCGCTACAAATTACTTAGGACACTTTTTGGTAACGAAGATGCTACTAGAGAAAATGATAGATACTGCAAAGAAGACAGGCATTCAAGGAAGAATAATAAACGTTTCTTCTGTGATTCATAGCTGGGTGAAAAGATCTTGTTTTTCTTTCAACGACATGCTCTGTGGAAAAAATTATAATGGCACACGCGCATATGCTAAGTCAAAATTGGCCACAATTCTGCATGTGAAGGAAGTAGCCAGACAGCTGAAGGAAAGGAATGCAAATGTAACTATTAATGCAGTGCATCCAGGCATTGTGAAGACGGGAATTATTAGAGCACATAAGGGCTTAATAACGGATTCCCTATTTTTCATTGCATCGAAGTTGCTGAAATCGATATCACAGGGTGCATCAACGACGTGTTATGTTGCTCTAAGCGAACAAACAGATGGAGTGAGTGGGAAATATTTTACAGATTGTAACGAGAGTAACTGCTCCAGTCTAGCAAATGACGAATCAGAAGCTAGAAAGCTATGGAATGACACCCATGCCTTGCTTCACAAACGGCTACGTCAAGCAACAAATTCAAAGTGTTTCTTCCCCACCTAG 1065 0.4113 MKATLRYLAGLAGPSGFGSNSTAEQVTQDCSSLLPSNLTALITGGTSGIGAETARVLAKRGVRIVIGARDLRKAKEVREKIQKESPHAEVILLEIDLSSFASVQRFCSEFLALDLPLNILMQKYIHEGLKVRVIVFHRNNAGMYSQNLEFSEEKIEMTFATNYLGHFLVTKMLLEKMIDTAKKTGIQGRIINVSSVIHSWVKRSCFSFNDMLCGKNYNGTRAYAKSKLATILHVKEVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSEQTDGVSGKYFTDCNESNCSSLANDESEARKLWNDTHALLHKRLRQATNSKCFFPT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00816 354 Pfam short chain dehydrogenase 39 197 IPR002347 -
Gma17g00816 354 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 345 - -
Gma17g00816 354 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Gma17g00816 354 PRINTS Glucose/ribitol dehydrogenase family signature 182 198 IPR002347 -
Gma17g00816 354 PRINTS Glucose/ribitol dehydrogenase family signature 223 242 IPR002347 -
Gma17g00816 354 PRINTS Glucose/ribitol dehydrogenase family signature 246 263 IPR002347 -
Gma17g00816 354 PANTHER RETINOL DEHYDROGENASE 4 345 - -
Gma17g00816 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 315 IPR036291 -
Gma17g00816 354 Gene3D - 29 343 - -
Gma17g00816 354 CDD retinol-DH_like_SDR_c_like 39 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00816 Gma-Chr17 6847429 6850626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00816 41 265 Acyl Lipid Metabolism Gene Families AT1G63380 27.234 9.12e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00816 - K11153 gmx:100819058 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00816 17 6847429 6850626 Gma17g00816 17 6847429 6850626 ECH
Gma17g00816 17 6847429 6850626 Gma05g00383 05 3575061 3578308 GST
Gma17g00816 17 6847429 6850626 Gma04g01804 04 48085210 48089417 PCT
Gma17g00816 17 6847429 6850626 Gma06g01603 06 15630814 15634511 PCT
Gma04g01804 04 48085210 48089417 Gma17g00816 17 6847429 6850626 PCT
Gma06g01603 06 15630814 15634511 Gma17g00816 17 6847429 6850626 PCT