Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01804 ATGTATAAAAATAGCTGCATGTGTTTGCATAGTCTAACCTTCAAATGTCATTTGTCCTTGCAACACTCTAAAGCCATGAAGGCAACACTAAGATACTTAGCAGGAATGGCAGGCCCTAGTGGTTTTGGCTCAAATTCAACAGCTGAACAAGTCACTGAAGATTGTTCTTCCTTCCTTCCTTCTGCAGCTCTAACCGCTCTCATCACTGGGGCGAGTTCTGGTATTGGAGCTGAAACAGCAAGAGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGCTGCAAGGGACTTGAAGAAGGCCACGGAAGTGAAAAAGAACATACAAAAGGAGACTCCAAAAGCTGAGGTTATTCTGTTGGAGATTGATCTTGGCTCTTTTGGTTCTGTGCAGAGATTTTGTTCCGAGTTTTTGGCTTTAGAACTTCCCCTTAATATTCTCATAAACAATGCAGGGATGTTTTCTCAAAACTTGGAGTTCTCTGAGGATAAAATTGAGATGACATTTGCTACAAATTACCTAGGTCATTTCTTGTTAACAGAAATATTAATAGACAAAATGATAGAGACGGCAGAGAAGACATGTATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGAGAAAAAAGATGGTTTTCGTTTCAACGACATACTCAGTGGAAAAAAATATAATGGCACACGTGCTTATGCTCAGTCAAAATTGGCAAATATTTTGCATGCAAAGGAAATAGCCAAGCAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTGCACCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCATAAGGGCTTAATAACGGATTCCCTATTTTTTATTGCATCAAAGTTACTCAAAACGACATCACAGGTGTGTAAACAAACACATTCGGTTCAAAACTTGCAGTTATCTTAA 933 0.3912 MYKNSCMCLHSLTFKCHLSLQHSKAMKATLRYLAGMAGPSGFGSNSTAEQVTEDCSSFLPSAALTALITGASSGIGAETARVLAKRGVRVVIAARDLKKATEVKKNIQKETPKAEVILLEIDLGSFGSVQRFCSEFLALELPLNILINNAGMFSQNLEFSEDKIEMTFATNYLGHFLLTEILIDKMIETAEKTCIQGRIINVSSVIHSWEKKDGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKTTSQVCKQTHSVQNLQLS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01804 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 152 IPR002347 -
Gma04g01804 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 205 IPR002347 -
Gma04g01804 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 232 251 IPR002347 -
Gma04g01804 310 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 65 278 IPR036291 -
Gma04g01804 310 PRINTS Glucose/ribitol dehydrogenase family signature 65 82 IPR002347 -
Gma04g01804 310 PRINTS Glucose/ribitol dehydrogenase family signature 141 152 IPR002347 -
Gma04g01804 310 PRINTS Glucose/ribitol dehydrogenase family signature 191 207 IPR002347 -
Gma04g01804 310 PRINTS Glucose/ribitol dehydrogenase family signature 232 251 IPR002347 -
Gma04g01804 310 PRINTS Glucose/ribitol dehydrogenase family signature 255 272 IPR002347 -
Gma04g01804 310 PANTHER RETINOL DEHYDROGENASE 29 302 - -
Gma04g01804 310 Pfam short chain dehydrogenase 65 206 IPR002347 -
Gma04g01804 310 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 29 302 - -
Gma04g01804 310 Gene3D - 61 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01804 Gma-Chr4 48085210 48089417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01804 67 274 Acyl Lipid Metabolism Gene Families AT3G55290 29.577 4.44e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01804 - - gmx:100799729 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01804 04 48085210 48089417 Gma04g01804 04 48085210 48089417 ECH
Gma04g01804 04 48085210 48089417 Gma06g01603 06 15630814 15634511 GST
Gma17g00816 17 6847429 6850626 Gma04g01804 04 48085210 48089417 PCT
Gma05g00383 05 3575061 3578308 Gma04g01804 04 48085210 48089417 PCT
Gma04g01804 04 48085210 48089417 Gma17g00816 17 6847429 6850626 PCT
Gma04g01804 04 48085210 48089417 Gma05g00383 05 3575061 3578308 PCT