Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01603 ATGAAGGCAACACTAAGATACTTAGCAGGAATGGCAGGCCCTAGTGGTTTTGGCTCAAATTCAACAGCTGAACAAGTCACTGAAGATTGTTCTTGCTTCCTTCCTTCTGCTCTAACCGCTCTGATCACCGGGGCGAGTTCTGGTATTGGAGCTGAAACAGCAAGAGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGCTGCAAGGGACTTGAAGAAGGCAAAGGAAGTGAAAAAGAACATACAAAAGGAGACTCCAAAAGCTGAGGTTATTCTGTTGGAGATTGATCTTGGCTCTTTTGGTTCTGTGCAGAGATTTTGTTCCGAGTTTTTGGCTTTAGAACTTCCCCTTAACATTCTCATAAACAATGCAGGGATGTTTTCTCAAAACTTGGAGTTCTCTGAGGATAAAATTGAGATGACATTTGCTACAAATTACTTAGGTCATTTCTTGTTAACAGAAATATTATTAGACAAAATGATAGAGACGGCAGAGAAGACAGGTATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAAAGGTGGTTTTCGTTTCAACGACATACTCAGTGGAAAAAAATATAATGGCACACGCGCTTATGCTCAGTCAAAATTGGCAAATATTTTGCATGCAAAGGAAATAGCCAAGCAACTGAAGGCAAGGAATGAAAGAGTAACAATCAATGCAGTGCATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCATAAGGGCTTAATAACAGATTCCCTATTTTTTATCGCATCAAAGTTACTCAAAACGACATCGCAGGGTGCATCAACTACGTGTTATGTTGCACTGAGCCCCAAAACAGAAGGGATAAGTGGAAAATACTTTGCAGATTGCAATGAGAGTAAATGCTCGAGCCTTGCAAACGACGAATCGGAAGCTCAAACGCTATGGAACAACACCCATGCCTTGCTTCAAAAACGACTGCGTCAAGCAACAATTTGA 993 0.4079 MKATLRYLAGMAGPSGFGSNSTAEQVTEDCSCFLPSALTALITGASSGIGAETARVLAKRGVRVVIAARDLKKAKEVKKNIQKETPKAEVILLEIDLGSFGSVQRFCSEFLALELPLNILINNAGMFSQNLEFSEDKIEMTFATNYLGHFLLTEILLDKMIETAEKTGIQGRIINVSSVIHSWVKKGGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKARNERVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKTTSQGASTTCYVALSPKTEGISGKYFADCNESKCSSLANDESEAQTLWNNTHALLQKRLRQATI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01603 330 Gene3D - 36 326 - -
Gma06g01603 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Gma06g01603 330 PANTHER RETINOL DEHYDROGENASE 4 325 - -
Gma06g01603 330 Coils Coil 64 84 - -
Gma06g01603 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Gma06g01603 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Gma06g01603 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Gma06g01603 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Gma06g01603 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Gma06g01603 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Gma06g01603 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Gma06g01603 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Gma06g01603 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Gma06g01603 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Gma06g01603 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01603 Gma-Chr6 15630814 15634511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01603 41 245 Acyl Lipid Metabolism Gene Families AT3G55290 30.000 2.03e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01603 - - gmx:100801384 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01603 06 15630814 15634511 Gma06g01603 06 15630814 15634511 ECH
Gma04g01804 04 48085210 48089417 Gma06g01603 06 15630814 15634511 GST
Gma17g00816 17 6847429 6850626 Gma06g01603 06 15630814 15634511 PCT
Gma05g00383 05 3575061 3578308 Gma06g01603 06 15630814 15634511 PCT
Gma06g01603 06 15630814 15634511 Gma17g00816 17 6847429 6850626 PCT
Gma06g01603 06 15630814 15634511 Gma05g00383 05 3575061 3578308 PCT