Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00780 ATGCGGCAAACTCACGGAAATATGTCACGCACTCGTATCGCCATTCAGCGCTTCCGCCACACCTACACCGCGTTATCATCATCAGCTGCACTTACTCGCTCCCAATTCCAATGCTCTCAACAACATCTCACGCGCGCACCCCTCCTCTTCCACGCTCCTCGTCATTATTCATCTTCCCCCAAACAAGACTATCCCACCGGAGACTTTGATTTCAAGCCCATCACAGGCTGGAAAAAGTTCACCGTCAACCTCAAGATGCTAACGGCTTTCCCCTGGGAGCGTCTCCGATACGGCACCCTGTTAACAATCAAGTTGCGCGGCCAGATATCGGATCAGCTCAATAGTAGGTTCTCCCCGGGATTATCTCTGCCTCAAATCTGTGATAATTTCTTCAAGGCAACTTATGACCCTCGAATTTCCGGCATCTATCTCCATATTGATATTTTAAATTGTGGTTGGGCAAAGGTCGAAGAAATTCGAAGACATATCTTGAATTTCAGAAAATCAGGAAAATTTGTTGTGGCTTACGTCCCTTCATGTCGAGAAAAAGAATATTATATTGCGTGTGCCTGTGAAGAAATATATGCCCCTCCAAGTGCATATTTTTCTTTGTTTGGATTGACTGTTCAAGCCCCATTTCTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTGGAAAGGATTGGCAAATACAAAAGTGTAGGAGATCAACTTACCCGTAAAACCATGTCTGAAGATCATCATGAGATGCTTACTGCGTTGCTTGATAATATCTATACTAATTGGCTGGACAAAGTCTCTTCTGCTAGAGGAAAGAAAAGGGAAGATATTGAGAACTTCATAAATAAAGGTGTCTATCAAGTAGAGAGACTTAAAGAAGAGGGCTTCTTAACAGACATAATCTATGATGACGAGGTTATCACTCGGTTAAAGGAGAGACTTCAAGTTAAAACTGATAAAAATCTTCCTATGGTTGATAACAGAAAATACTCTGGAGTTAGGAAATCGACTCTTGGACTATCAGGTGGCAAAGAATTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGCCGTATCGAGAGTTCATTAAGTACCCGTAGCTCTGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAAAGTTAGAGAGTCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTCCGTGCAGCTGAACAGCGTTCTTTAAGACCAGATGAAGCAGAGCTATTTTCCAAGTCTGCGCAGCATGCTTATAAACAATTTCGAGATAAGGCAGCTTTATCCAGATCTATGACTGTAGACAAGATGGAAGAGGTTGCACAAGGAAGGGTTTGGACTGGTAAGGACGCAGCTTCTCACGGTTTGGTTGATGCTATTGGTGGCCTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAGGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTACGTGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTCAATGAATTACTACAGGACTTGACATTTTCCCATGAAGTCCAAGCACGAATGGACGGAATCATGTTTGAGAAATTGGAAGGATATCCATATGCCAACCCCATTTTGGCATTGATAAAAGATTATCTTAGTTCCCTGTAG 1950 0.4313 MRQTHGNMSRTRIAIQRFRHTYTALSSSAALTRSQFQCSQQHLTRAPLLFHAPRHYSSSPKQDYPTGDFDFKPITGWKKFTVNLKMLTAFPWERLRYGTLLTIKLRGQISDQLNSRFSPGLSLPQICDNFFKATYDPRISGIYLHIDILNCGWAKVEEIRRHILNFRKSGKFVVAYVPSCREKEYYIACACEEIYAPPSAYFSLFGLTVQAPFLRGVLENLGIEPEVERIGKYKSVGDQLTRKTMSEDHHEMLTALLDNIYTNWLDKVSSARGKKREDIENFINKGVYQVERLKEEGFLTDIIYDDEVITRLKERLQVKTDKNLPMVDNRKYSGVRKSTLGLSGGKELIAIIRASGSIRRIESSLSTRSSGIIGEKLIEKIRKVRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELRAAEQRSLRPDEAELFSKSAQHAYKQFRDKAALSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAVAIAKLKANIPLDRQVTVLELSRPSPSLPEILRGLGNSLVGVDRTFNELLQDLTFSHEVQARMDGIMFEKLEGYPYANPILALIKDYLSSL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00780 649 PIRSF Protease_4_SppA 21 649 IPR004634 GO:0006465|GO:0008233|GO:0016021
Gma17g00780 649 CDD S49_SppA_67K_type 101 314 - -
Gma17g00780 649 Pfam Peptidase family S49 166 318 IPR002142 GO:0006508|GO:0008233
Gma17g00780 649 Pfam Peptidase family S49 417 567 IPR002142 GO:0006508|GO:0008233
Gma17g00780 649 SUPERFAMILY ClpP/crotonase 95 304 IPR029045 -
Gma17g00780 649 CDD S49_Sppa_N_C 349 563 IPR002142 GO:0006508|GO:0008233
Gma17g00780 649 Gene3D - 99 334 - -
Gma17g00780 649 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 350 562 IPR004635 GO:0006508|GO:0008233
Gma17g00780 649 PANTHER PROTEASE 4 20 648 - -
Gma17g00780 649 SUPERFAMILY ClpP/crotonase 351 554 IPR029045 -
Gma17g00780 649 Gene3D - 345 494 - -
Gma17g00780 649 Gene3D - 495 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00780 Gma-Chr17 6567652 6575315 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00780 K04773 - gmx:100809623 1260.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00780 17 6567652 6575315 Gma17g00780 17 6567652 6575315 ECH
Gma17g00780 17 6567652 6575315 Gma05g00163 05 1553827 1557644 GST
Gma17g00780 17 6567652 6575315 Gma06g01868 06 20273775 20289889 PCT