Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00560 ATGGGAACGTTCCAGACCTTAAGAAAGGCCTACGGTGCTCTCAAAGACTCCACCACGGTTGGCCTAGCCAAGGTCAATAGCGAATATAAGGAATTGGATATTGCAATTGTGAAGGCTACGAGTCACGTAGAATATCCTCCTAAGGAACGTCATGTTAGAAAAATATTCTATGCAACTTCAGCACACCAGCCGCGGGCAGATGTAGCTTACTGCATACACACACTAGCCAAGCGGCTTTCGAAGACACGGAATTGGATAGTTGCCATAAAGACATTGATAGTCATTCATAGAATATTGAGAGAGGGTGATCCTACTTTCAAAGATGACCTCACAGCCTACGTGCGCAGGGGACGTTTTCTTCAAATATCTAATTTCAAAGATGACTCAAGTGCTCTAGGTAGATTAGACAGATCCTCTTGTTATCTGAATTTTCTTTCATTCATTTTATGCTTAATTAGATTTCTCTATGCAGCTTGGGACTGTTCTGCATGGGTTCGAACCTACGCACTATTTTTAGAAGAAAGGCTTGAATGTTTTAGAATCCTAAGATATGACATCGAAGCTGAGCGTTTAACAAAACCATCACCGACTATAACTCAAGGACATAGCAGAACACGAATGTTGACTAGTGAAGGGCTATTGGAGCAGCTGCCTGCACTGCAGCAACTTCTATATCGCCTAATTGGTTGTGAGCCTGAAGGGTTGGCTTTACGCAATCATCTAATACAGTATGCACTGGCCTTGATATTGAAAGAGAGCTTCAAAATATATTGCGCCCTCAATGATGGAATCATAAATCTTGTGGATGTGTTCTTTGATATGCCAAAATATGATGCAGTGAAGGCGTTACGTATTTATAAAAGAGCTGGCCAACAGGCTGAAAATCTTGCTGACTTCTATGAATACTGCAAGAGATTGGACCTTGCTAGGAATTTTCAATTTCCAACCTTGAGACTGCCACCTGCTTCTTTTCTTGCGACGATGGAAGAATACATTAAAGAAGCACCCCTGACTGCTACTAAGAGACTGGAGTATCACGAAAATGATCAATCACCTCAAAGTGAAGCAGAACCCAAAGAATCTGAAGAAGCTGAAGCAAGTGAGCAACCAGATGAAGAAGTCAACGAGGAAGAACTGGTAGATAAAGATGAAACACAACCTAAGGAAGAGGAAGCTGAACTTCCTCCTTTGATATCAACTGATGATTTGCTGGGTCTAAACGAGATAAATCCAAAAGCTCAAGAACTAGAAGAAAGCAATGCTTTGGCGCTTGCAATTGTACCACCCGGCGGACATTACTCAAACAATCTTGCGTTGACTAACATAAGCGGAACTTCTGGTTGGGAACTTGCACTGGTAACAACACCAAGTAACCATACAAGCCAAGCACCAGATCGCAGAATGGCTGGTGGGTTTGATAAGCTATTACTAGACAGTTTGTATGAAGATGAAAATGCCAGGAGACAACTTCAACTACGAAATGCAGGCTATGGATATGAGGGAATGGATACACATAATCCATTTGATCATTATAATCAGCAGGATCCATTTGCAATGTCCAACAACATAGCGCCTCCGGCCAATGTGCAAATGGCATTCATGGCTCAGCAACAACAACAAATGATGTTCCAACAACAGCAACAATATAACACGATGATGGTCCCTTACCAGTATCCACAGACTCAATACAATCAACAAATGCCAGTAATGGGTTCTGCTAATCCATTTAGTGATCCCTTATCCGTGCCTAGCTATACTTATAGTTCCATGCATCATCAAGGAAACTACCACTTAATGTAG 1800 0.4183 MGTFQTLRKAYGALKDSTTVGLAKVNSEYKELDIAIVKATSHVEYPPKERHVRKIFYATSAHQPRADVAYCIHTLAKRLSKTRNWIVAIKTLIVIHRILREGDPTFKDDLTAYVRRGRFLQISNFKDDSSALGRLDRSSCYLNFLSFILCLIRFLYAAWDCSAWVRTYALFLEERLECFRILRYDIEAERLTKPSPTITQGHSRTRMLTSEGLLEQLPALQQLLYRLIGCEPEGLALRNHLIQYALALILKESFKIYCALNDGIINLVDVFFDMPKYDAVKALRIYKRAGQQAENLADFYEYCKRLDLARNFQFPTLRLPPASFLATMEEYIKEAPLTATKRLEYHENDQSPQSEAEPKESEEAEASEQPDEEVNEEELVDKDETQPKEEEAELPPLISTDDLLGLNEINPKAQELEESNALALAIVPPGGHYSNNLALTNISGTSGWELALVTTPSNHTSQAPDRRMAGGFDKLLLDSLYEDENARRQLQLRNAGYGYEGMDTHNPFDHYNQQDPFAMSNNIAPPANVQMAFMAQQQQQMMFQQQQQYNTMMVPYQYPQTQYNQQMPVMGSANPFSDPLSVPSYTYSSMHHQGNYHLM 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00560 599 SUPERFAMILY GAT-like domain 203 334 - -
Gma17g00560 599 MobiDBLite consensus disorder prediction 346 360 - -
Gma17g00560 599 Pfam ANTH domain 31 334 IPR011417 GO:0005543
Gma17g00560 599 PANTHER CLATHRIN ASSEMBLY PROTEIN 158 586 IPR045192 GO:0048268|GO:0072583
Gma17g00560 599 Gene3D - 5 186 IPR008942 -
Gma17g00560 599 MobiDBLite consensus disorder prediction 346 403 - -
Gma17g00560 599 Gene3D ANTH domain 199 348 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Gma17g00560 599 SMART enth_2 30 186 IPR013809 -
Gma17g00560 599 ProSiteProfiles ENTH domain profile. 24 186 IPR013809 -
Gma17g00560 599 MobiDBLite consensus disorder prediction 381 395 - -
Gma17g00560 599 SUPERFAMILY ENTH/VHS domain 31 187 IPR008942 -
Gma17g00560 599 CDD ANTH_N 32 179 - -
Gma17g00560 599 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 133 IPR045192 GO:0048268|GO:0072583
Gma17g00560 599 MobiDBLite consensus disorder prediction 361 380 - -
Gma17g00560 599 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 133 - -
Gma17g00560 599 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 158 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00560 Gma-Chr17 4606921 4611862 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00560 K20044 - gmx:100818165 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00560 17 4606921 4611862 Gma17g00560 17 4606921 4611862 ECH
Gma17g00560 17 4606921 4611862 Gma13g00806 13 22361165 22366373 GST
Gma17g00560 17 4606921 4611862 Gma15g01544 15 14597591 14607725 PCT
Gma17g00560 17 4606921 4611862 Gma09g00539 09 5634346 5640188 PCT
Gma15g01544 15 14597591 14607725 Gma17g00560 17 4606921 4611862 PCT
Gma09g00539 09 5634346 5640188 Gma17g00560 17 4606921 4611862 PCT