Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00539 ATGGGAACGTTTCAGAGCTTCAGAAAAGCCTATGGAGCTCTCAAGGACTCAACCAAGGTTGGCCTCGCCAAAGTCAATAGTGAATACAAGGAGTTGGATATTGCAATTGTAAAGGCCACCAATCATGTGGAATATCCTCCCAAGGAACGTCATGTTCGAAAAATATTCTATGCAACATCAGCACACCAGCCACGGGCAGATGTGGCATACTGTATTCACAAACTTTCTAAGAGACTTTCTAAGACTCAAAGTTGGATAGTTGCTATAAAGACATTGATAGTCATTCACAGGACTTTGAGAGAGGGTGATCCCACCTTTAGAGAAGAGATTCTTAACTACTCCCGCAGGGGACATATTCTCCATATATCCAATTTCAAAGATGATTCAAGCCCTCTAGCTTGGGATTGTTCTGCATGGGTTCGAGTCTATGCACTATTTTTAGAAGAAAGACTTGAATGTTTTAGAGTCCTTAAATATGACATAGAATCCGAGCGTTTAACAAAAGCATCACCAGCTGTAAATAAAGCACATAGCAGAACTCGATTGTTGGATAGTAATGATCTGTTGGAGCAGCTACCGGCACTACAACAACTTCTATATCGCCTTATTGGTTGTCAGCCTGAAGGATGTGCTTACCGTAATCATCTAGTACAATATGCGTTGGCCCTGGTTTTGAAAGAAAGTTTCAAAATATACTGCGCACTCAATGATGGAATCATCAATCTTGTTGACATGTTCTTTGATATGACAAGACATGACGCAGTGAAGGCTCTAAACATTTATAAAAGAGCTGGCCAACAGGCTGAGAATCTTGCTGACTTCTATGATTACTGCAAAGGCTTGGACCTTGCTAGGAATTTCCAATTTCCAACACTGAGACAGCCACCTCCCTCTTTCCTTGCAACAATGGAAGAATACATTAAAGAAGCACCCCAGACAGGCCATGTTAATAAGAGACTGGAGTATCAAGAAAATGATGAATCGTCTAAAGAGGAATCAGAATCCAATGAATCTGCAGAGCCTCAAGCAAATGAGGAACAAGCTGAGGAAGTCAATGGGGAAGAGTCAGTAGAAGAGGAAGAAGAAAAACCTAAGCAGGAGGAGGAGGCAGAGTCTCCTCCTTTTATATCAACTGATGATGGTATAGATGATTTGCTGGGTCTTAATGAAATAAATCCAAAAGTTATGGAATTGGAGGAAAGCAATGCTATGGCTCTTGCAATTGTACCATCTGGTGGAAATAATCCAAACAATCTTGCTTTGAGTAACATTGACGGGACTATTGGATGGGAACTTTCACTTGTTACTGCACCAAGTAACCATTCCAGTCAAGCCCCGGATCGCAGAATGGCTGGTGGTTTTGACAAGCTATTACTGGATAGTCTATATGAAGATGAAAATGCCAGGAGACAACTCCAACTCCAAAATGCAGGTTATGGACATGGTGGAACAATGGATATACATAACAACCCATTTGATCATTACAATCAGCATGATCCATTTGCAATGTCCAACAACATTGCACCTCCCCCCAGTGTGCAAATGGCATTAATGTCTCAACAACAACAGCAACAACAAATGGTGTTCCAACAGCAGCAAATGATGTACCAACAACCACAACAACACAACAACAACATGATGATGGTCCCTCACCAACAGCAACAACCATATAACCAATTCCCTCATCAGATGCAGAATTCAGGTTCTCATAATCCATTTGGAGATCCCTTACTGGTACCAAACTATAATCATAGTTCCATGCCCCAACGTGGAAATTACAATTTAATATAG 1791 0.4115 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVAYCIHKLSKRLSKTQSWIVAIKTLIVIHRTLREGDPTFREEILNYSRRGHILHISNFKDDSSPLAWDCSAWVRVYALFLEERLECFRVLKYDIESERLTKASPAVNKAHSRTRLLDSNDLLEQLPALQQLLYRLIGCQPEGCAYRNHLVQYALALVLKESFKIYCALNDGIINLVDMFFDMTRHDAVKALNIYKRAGQQAENLADFYDYCKGLDLARNFQFPTLRQPPPSFLATMEEYIKEAPQTGHVNKRLEYQENDESSKEESESNESAEPQANEEQAEEVNGEESVEEEEEKPKQEEEAESPPFISTDDGIDDLLGLNEINPKVMELEESNAMALAIVPSGGNNPNNLALSNIDGTIGWELSLVTAPSNHSSQAPDRRMAGGFDKLLLDSLYEDENARRQLQLQNAGYGHGGTMDIHNNPFDHYNQHDPFAMSNNIAPPPSVQMALMSQQQQQQQMVFQQQQMMYQQPQQHNNNMMMVPHQQQQPYNQFPHQMQNSGSHNPFGDPLLVPNYNHSSMPQRGNYNLI 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00539 596 Coils Coil 343 363 - -
Gma09g00539 596 MobiDBLite consensus disorder prediction 311 385 - -
Gma09g00539 596 MobiDBLite consensus disorder prediction 311 326 - -
Gma09g00539 596 Gene3D - 5 161 IPR008942 -
Gma09g00539 596 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Gma09g00539 596 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Gma09g00539 596 SUPERFAMILY GAT-like domain 178 309 - -
Gma09g00539 596 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 583 - -
Gma09g00539 596 SMART enth_2 30 161 IPR013809 -
Gma09g00539 596 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Gma09g00539 596 CDD ANTH_N 32 154 - -
Gma09g00539 596 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 583 IPR045192 GO:0048268|GO:0072583
Gma09g00539 596 MobiDBLite consensus disorder prediction 343 366 - -
Gma09g00539 596 Gene3D ANTH domain 174 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00539 Gma-Chr9 5634346 5640188 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00539 K20044 - gmx:100783084 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00539 09 5634346 5640188 Gma09g00539 09 5634346 5640188 ECH
Gma15g01544 15 14597591 14607725 Gma09g00539 09 5634346 5640188 GST
Gma17g00560 17 4606921 4611862 Gma09g00539 09 5634346 5640188 PCT
Gma13g00806 13 22361165 22366373 Gma09g00539 09 5634346 5640188 PCT
Gma09g00539 09 5634346 5640188 Gma17g00560 17 4606921 4611862 PCT
Gma09g00539 09 5634346 5640188 Gma13g00806 13 22361165 22366373 PCT