Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00554 ATGGCCACCCTCGACCCAATCCAAAACGGCGTCTCTTCGGACAATCCAGCCGCCGAACCGTCCTCCACCCCCGCCGAAGACCCCACCCCAGACCCCGCCGCCGCCGAGAAGCGGTGGCCGGGGTGGCCTGGCCACTGCGTTTTCCGCCTAATCGTGCCGGTGCTCAAGGTCGGTAGCATCATCGGCCGCAAGGGGGAGCTCATCAAGAAGACCTGCGAGGAAACGAAAGCTCGCATTCGAGTCCTCGACGGCGCCGTCGGCACCTCCGATCGAATCGTACTCATATCAGGGAAGGAAGAGCCGGAGGCACCTCTTTCTCCTGCAATGAATGCTGTAATAAGGGTTTTTAAACGTGTCTCTGGGTTTTCTGAAATTGATGCCGAGAATAAAGCATCAGCAGTTGCATTTTGTTCTGTCCGTTTATTGGTGGCCTCAACACAGGCTATAAATTTGATTGGAAAGCAGGGTTCATTAATTAAATCTATACAGGAAAATACCGGTGCTTCTGTTAGAGTGCTGTCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGACGAGAGGATCGTGGAACTACAGGGAGAAGCCATGAAGGTCCTTAAGGCTTTAGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGATAATAGTGTTCTTCCCTTATTTGAGAAAACTTACAATGCAACAATCTCCCAAGAGCACCAGGCAGATACTACCTGGGTTGATAAACCATCACTGCATAGTGCTTCACAACCTAGCATTGTAACTGATCTTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGCTGACCGTGAAAGTCAGTTGGACTCATTGCTCCCTCCTTCCACAATGTCAATATATGGGCAAGATTCTTCACTTTCTGGTCTTCGTTCTTCGGCTCTCAGTCGACCCAGTGCTCCTCCTATTGTTACAACGGTAATACAAACCATGCAAATACCATTGTCCTATGCAGAGGACATAATTGGTATACAAGGGACTAATATTGAATACATTCGCTGTACTAGTGGAGCCATATTGACTGTTCAGGAGAGCCCGGTGCCTGATGAAATCATTGTGGAAATAAAAGGTACCTCATCTCAGGTTCAAACGGCACAACAGTTGATTCAGGAAGTTATAAGTAATCACAAAGAACCTCTTGCTAGTAATTACAGCAGGTTAGATACAGGCCTGAGGTCTTCTTACCCTCAGTTGGGCAGTTCATCGTATTCCTCATCTTCCTTGTCCTCGCAACCCTATAGCGGTGGGTACGGATCTTCTGGTCTTGGAGGCTATAGGACTTTCAGACTTTGA 1311 0.4828 MATLDPIQNGVSSDNPAAEPSSTPAEDPTPDPAAAEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRIVLISGKEEPEAPLSPAMNAVIRVFKRVSGFSEIDAENKASAVAFCSVRLLVASTQAINLIGKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDNSVLPLFEKTYNATISQEHQADTTWVDKPSLHSASQPSIVTDLPLSTKRDSLFADRESQLDSLLPPSTMSIYGQDSSLSGLRSSALSRPSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRCTSGAILTVQESPVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPLASNYSRLDTGLRSSYPQLGSSSYSSSSLSSQPYSGGYGSSGLGGYRTFRL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00554 436 Gene3D - 45 213 - -
Gma17g00554 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 307 381 IPR036612 GO:0003723
Gma17g00554 436 CDD PCBP_like_KH 47 116 - -
Gma17g00554 436 MobiDBLite consensus disorder prediction 1 38 - -
Gma17g00554 436 CDD PCBP_like_KH 138 206 - -
Gma17g00554 436 MobiDBLite consensus disorder prediction 402 421 - -
Gma17g00554 436 ProSiteProfiles Type-1 KH domain profile. 312 375 - -
Gma17g00554 436 ProSiteProfiles Type-1 KH domain profile. 136 205 - -
Gma17g00554 436 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 33 426 - -
Gma17g00554 436 Pfam KH domain 315 377 IPR004088 GO:0003723
Gma17g00554 436 Pfam KH domain 139 205 IPR004088 GO:0003723
Gma17g00554 436 Pfam KH domain 48 100 IPR004088 GO:0003723
Gma17g00554 436 Gene3D K Homology domain, type 1 310 385 IPR036612 GO:0003723
Gma17g00554 436 ProSiteProfiles Type-1 KH domain profile. 45 112 - -
Gma17g00554 436 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 33 426 - -
Gma17g00554 436 CDD KH-I 314 376 - -
Gma17g00554 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 132 219 IPR036612 GO:0003723
Gma17g00554 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 100 IPR036612 GO:0003723
Gma17g00554 436 MobiDBLite consensus disorder prediction 1 22 - -
Gma17g00554 436 SMART kh_6 135 210 IPR004087 GO:0003676
Gma17g00554 436 SMART kh_6 311 380 IPR004087 GO:0003676
Gma17g00554 436 SMART kh_6 44 117 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00554 Gma-Chr17 4569977 4574217 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00554 K21444 - gmx:100807645 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00554 17 4569977 4574217 Gma17g00554 17 4569977 4574217 ECH
Gma17g00554 17 4569977 4574217 Gma13g00810 13 22393561 22399058 GST
Gma17g00554 17 4569977 4574217 Gma15g01550 15 14675023 14692072 PCT
Gma17g00554 17 4569977 4574217 Gma09g00543 09 5677839 5684272 PCT
Gma15g01550 15 14675023 14692072 Gma17g00554 17 4569977 4574217 PCT
Gma09g00543 09 5677839 5684272 Gma17g00554 17 4569977 4574217 PCT