Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00543 ATGGCCACCGCCGAACCACTCCAGAACGGCTCCGCCGAAAACCCACTTCCGGTGGACAATGCCCCCGCCGCGCAACCGCCCACCGAAACGGAAGCTGACGCCGCCGCCACGGCATCTACTCCGCCGGAGAAGAGGTGGCCGGGGTGGCCTGGGGACTGCGTGTTTCGGCTCATCGTGCCGGTGGGAAAAGTGGGAAGCATCATTGGACGCAAGGGAGAGCTGATAAAGAAGATGTGCGAAGAAACTCGATCCCGCATTCGCGTTCTCGACGCTCCTCTCGGCACTCCCGATCGAATTGTACTTGTGTCCGGGAAGGAAGATCCAGAGGCAGCTCTTTCCCCGGCAATGGATGCTGTAGTAAGGATATTCAAGCGTGTCTCTGGATTCTCTGAAACTGATGCTGAGAATCAAGAATCTGCCGCTGGTCTTGCATTTTCTTCCATCCGTTTATTGGTGGCATCGACTCAGGCTATCAATTTAATTGGAAAGCAAGGCTCGTTAATCAAATCTATTCAGGAGAATACCAGTGCTTCAGTTAGAGTGTTGTCAGGAGATGAGGTGCAATTTTATGCTACTGCGAATGAGAGGATTGTGGAAATTCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCATAGCGTTCTTCCCCTATTTGAGAAAACTTACAATGCCCCTACCTCACAAGACCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGTTGCATACTTCTTCACGTACTAGCATATTTGCCGATATTCCTCTTTCAACAAAAAGGGATTCTGTCTTAGCTGACCGTGAAAGTCAATTGGACTTGTTTCTCCCTTCCTCCACTATGTCTCTCTATGGGCAGGATTCTTCACTTTCTGGCGTCCATTCTTCAGCTCTTGGCCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAAGACATCATTGGTATTCAAGGGACTAATATTGAATACATTCGCCGCACTAGTGGAGCCATATTGACTGTGCAGGAGAGCCGGGTTCCTGATGAAATCGTTGTAGAAATAAAAGGCACCTCATCTGAGGTTCAAACAGCTCAACAATTGATTCAGGATGTTATAAGCAGTCACAAAGAACCTGTCACTAGCAGTTATGGCAGGCTAGATGCAGTTCCAAGGTCTTCATACTCTCATTTGGGCACTACATCACGCCTCCCTCCATCTTCGTTGTCCTCACAACCATACACAGGTTATGGAGCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1332 0.4842 MATAEPLQNGSAENPLPVDNAPAAQPPTETEADAAATASTPPEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGKEDPEAALSPAMDAVVRIFKRVSGFSETDAENQESAAGLAFSSIRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVQFYATANERIVEIQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNAPTSQDRQAETWSDKSLLHTSSRTSIFADIPLSTKRDSVLADRESQLDLFLPSSTMSLYGQDSSLSGVHSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIVVEIKGTSSEVQTAQQLIQDVISSHKEPVTSSYGRLDAVPRSSYSHLGTTSRLPPSSLSSQPYTGYGASGLGDYSTFRL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00543 443 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 41 430 - -
Gma09g00543 443 MobiDBLite consensus disorder prediction 1 15 - -
Gma09g00543 443 MobiDBLite consensus disorder prediction 1 47 - -
Gma09g00543 443 SMART kh_6 144 219 IPR004087 GO:0003676
Gma09g00543 443 SMART kh_6 51 124 IPR004087 GO:0003676
Gma09g00543 443 SMART kh_6 318 387 IPR004087 GO:0003676
Gma09g00543 443 Pfam KH domain 148 214 IPR004088 GO:0003723
Gma09g00543 443 Pfam KH domain 322 384 IPR004088 GO:0003723
Gma09g00543 443 Pfam KH domain 55 107 IPR004088 GO:0003723
Gma09g00543 443 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 315 388 IPR036612 GO:0003723
Gma09g00543 443 ProSiteProfiles Type-1 KH domain profile. 319 382 - -
Gma09g00543 443 ProSiteProfiles Type-1 KH domain profile. 52 119 - -
Gma09g00543 443 CDD KH-I 321 383 - -
Gma09g00543 443 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 45 111 IPR036612 GO:0003723
Gma09g00543 443 MobiDBLite consensus disorder prediction 408 429 - -
Gma09g00543 443 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 143 226 IPR036612 GO:0003723
Gma09g00543 443 CDD PCBP_like_KH 147 215 - -
Gma09g00543 443 ProSiteProfiles Type-1 KH domain profile. 145 214 - -
Gma09g00543 443 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 41 430 - -
Gma09g00543 443 Gene3D K Homology domain, type 1 318 392 IPR036612 GO:0003723
Gma09g00543 443 CDD PCBP_like_KH 54 123 - -
Gma09g00543 443 Gene3D - 52 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00543 Gma-Chr9 5677839 5684272 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00543 K21444 - gmx:100817448 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00543 09 5677839 5684272 Gma09g00543 09 5677839 5684272 ECH
Gma15g01550 15 14675023 14692072 Gma09g00543 09 5677839 5684272 GST
Gma17g00554 17 4569977 4574217 Gma09g00543 09 5677839 5684272 PCT
Gma13g00810 13 22393561 22399058 Gma09g00543 09 5677839 5684272 PCT
Gma09g00543 09 5677839 5684272 Gma17g00554 17 4569977 4574217 PCT
Gma09g00543 09 5677839 5684272 Gma13g00810 13 22393561 22399058 PCT