Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01550 ATGGCCACCGCCGAACCACTCCAGAATGGCACCGCCGAACCACTCCTGCCGGACAATGTCTCCGCCGCACAACCGCCCACCGAGACGGAATCCAACGCCGCCGCCGCGGCTTCCACTCCGCCGGAGAAGAGGTGGCCGGGGTGGCCTGGGGACTGCGTGTTCCGGCTCATCGTGCCGGTGGGGAAAGTTGGAAGCATCATTGGGCGCAAGGGAGAACTGATAAAGAAGATGTGCGAAGAAACTCGATCTCGCATTCGCGTTCTCGACGCTCCTCTCGGCACTCCTGATCGAATTGTACTTGTGTCCGGGAAGGAAGAGCCAGAGGCAGCCCTTTCCCCGGCAATGGATGCTGTAGTAAGGATATTCAAGCGTGTCTCTGGATTATCTGAAACTGATGCTGAGAATAAAGAATCGGCTGCTGGTCTTGCATTTTGTTCCATCCGTTTATTGGTGGCATCGACACAGGCTATCAATTTAATTGGAAAGCAAGGCTCGTTAATCAAATCTATTCAGGAGAATACCAGTGCTTCAGTTAGAGTGTTGTCAGGAGATGAGGTTCAATCTTATGCTACCGTGGATGAGAGGATTGTGGAAATTCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTTGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCATAGCGTTCTTCCCCTATTTGAGAAAACTTACAATGCCTCTACCTCACAAGATCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGCTGCATACTACTTCACGCACTAGCATATTTGCCGATATTCCATATTCAACAAAAAGAGATTCTGTCTTAGCTGACCGTGAGAGTCAATTGGACTCGTTTCTCCCTTCCTCCACTATGTCTCTCTATGGGCAGGATTCTTCACTTTCAGGTGTTCGTTCTTCAGCTCTTGGCCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTGTCTTATGCGGAAGACATCATTGGTATTCAAGGGACTAATATTGAATACATTCGTCGCACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTTCCTGATGAAATCGTTGTAGAAATAAAAGGCACCTCATCCGAGGTTCAAACAGCACAACAGTTGATTCAGGATGTTATAAGCAGTCACAAAGAACCTATCACTAGCAGTTATGGCAGGCTAGATGCAGGTCCAAGGTCTTCATACTCTCAGTTGGGCACTACATCGCGCCTCCCCCCATCTTCATTGTCCTCACAACCATACACAGGTTATGGAGCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1329 0.4838 MATAEPLQNGTAEPLLPDNVSAAQPPTETESNAAAAASTPPEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGKEEPEAALSPAMDAVVRIFKRVSGLSETDAENKESAAGLAFCSIRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVQSYATVDERIVEIQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNASTSQDRQAETWSDKSLLHTTSRTSIFADIPYSTKRDSVLADRESQLDSFLPSSTMSLYGQDSSLSGVRSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIVVEIKGTSSEVQTAQQLIQDVISSHKEPITSSYGRLDAGPRSSYSQLGTTSRLPPSSLSSQPYTGYGASGLGDYSTFRL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01550 442 ProSiteProfiles Type-1 KH domain profile. 318 381 - -
Gma15g01550 442 SMART kh_6 143 218 IPR004087 GO:0003676
Gma15g01550 442 SMART kh_6 317 386 IPR004087 GO:0003676
Gma15g01550 442 SMART kh_6 50 123 IPR004087 GO:0003676
Gma15g01550 442 Pfam KH domain 54 107 IPR004088 GO:0003723
Gma15g01550 442 Pfam KH domain 321 383 IPR004088 GO:0003723
Gma15g01550 442 Pfam KH domain 147 213 IPR004088 GO:0003723
Gma15g01550 442 CDD KH-I 320 382 - -
Gma15g01550 442 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 40 429 - -
Gma15g01550 442 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 387 IPR036612 GO:0003723
Gma15g01550 442 CDD PCBP_like_KH 146 214 - -
Gma15g01550 442 Gene3D K Homology domain, type 1 317 391 IPR036612 GO:0003723
Gma15g01550 442 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
Gma15g01550 442 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 40 429 - -
Gma15g01550 442 CDD PCBP_like_KH 53 122 - -
Gma15g01550 442 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 141 225 IPR036612 GO:0003723
Gma15g01550 442 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 44 110 IPR036612 GO:0003723
Gma15g01550 442 Gene3D - 51 221 - -
Gma15g01550 442 ProSiteProfiles Type-1 KH domain profile. 144 213 - -
Gma15g01550 442 MobiDBLite consensus disorder prediction 22 36 - -
Gma15g01550 442 MobiDBLite consensus disorder prediction 1 44 - -
Gma15g01550 442 MobiDBLite consensus disorder prediction 392 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01550 Gma-Chr15 14675023 14692072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01550 K21444 - gmx:100815466 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01550 15 14675023 14692072 Gma15g01550 15 14675023 14692072 ECH
Gma15g01550 15 14675023 14692072 Gma09g00543 09 5677839 5684272 GST
Gma17g00554 17 4569977 4574217 Gma15g01550 15 14675023 14692072 PCT
Gma13g00810 13 22393561 22399058 Gma15g01550 15 14675023 14692072 PCT
Gma15g01550 15 14675023 14692072 Gma17g00554 17 4569977 4574217 PCT
Gma15g01550 15 14675023 14692072 Gma13g00810 13 22393561 22399058 PCT