Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00515 atggcaagttattaTTATAGATTTTCAAAAGCTTTGATTATGCTATGTTTAACTTGCATAGTGTTGATCACACAGGCACAATCACAAACATGGTCATTACTCCAAGCACCAAAAGAAATAACCCTTAAGCTCATTCGTGACCCCGTGACCCTTTCACTAGCCTCAATTGATTATGGCCACATAGTTCATGACAACCCTTTTGCAATATTTGCCCCATCTTCCATTAGTGACATCTCACTCTTGATAAATTTCTCAAATTCTCTGGCCATCCCTATCACCATAGCTCCTAGAGGGCAAGCCCACTCGGTTCATGGACAAGCCATGACAAATCATGGGGTTGTGGTGAACATGACTGAGTTGAATGGCTTTAGAAATGGTGATGGGATTGTAGTAGTAGTTGATGACACAACTATTGGTCCATATGCAGATGTGGGTGGTGAACAAATTTGGATTGATGTGTTGCATGCAACACTTGAGCGTGGACTCACACCCCTCTCTTGGACAGATTACTTGTACTTATCGGTTGGTGGAACTCTCTCCAATGCTGGGATAAGTGGCCAAACCTTCAGGTTTGGTCCTCAGATTTCCAATGTTCATCAATTGGATGTTGTTACGGGGAAAGGAGACCTAGTGACGTGTTCTGCGGAGAACAACTCGGAGTTATTTTACGCCGTTCTAGGAGGTTTAGGCCAATTTGGAATTATAACCAGGGCAAGAATAGCTCTTGGGCCAGCACCAACGAGGGTGAAGTGGCTCCGTTTGCTTTACAACGATTTCTCTGCATTTTCTGGAGACCAAGAACACTTAATCTCTTTCAATGGAATAAACGAGACTAATGCAGCTGATTATGTAGAAGGTTTTCTTTTGCAAAATCAGCCACCACTGGACCTTTCCTTTTATCCAGAACCTGATCAACCTCGCATAACTTCCCTTGTAACCCAATACGGCATCATCTACGTCATAGAACTTGTCAAATATTACGACAATAGTACTCAAGAACACGTTGATGAGGATGTGAAACTTTTGGTCGAGAGATTAAAGTTTTTTCCTACGTTTATGTTTGAAAAAGATGTGTCGTACGAAGAGTTCCTAAACAGGGTTCATGCTGACGAGCTTTTCCTAAGGTCACAAGGGCTTTGGGATGTTCCTCATCCTTGGTTAAACCTCTTTGTTCCAGCATCTCGAATCTCGGATTTCGATGAAGGTGTGTTCAAGGGCATTATTCTCCAGCAAAATATCACTGCAGGACTTGTGATAATCTATCCCATGAACCGAACCAAgtgggatgataacatgtcagcagttacacctcatgatgatgttttctacgtggtgtcatttcttcgttcaactgggtttgataagttggaggaatttaaggctcaaaaccgacaaatattacagttctgtgcgaatgctggtatggggataaagcaatatcttccccaaaacaaaactcgggaaaaatgggaggagcagtttgggcccaaatggaaaactttcaaacaaagaaaagctcaatttgatcccaacagaatattgtcacctggacaggggattttcAATTAA 1569 0.3435 MASYYYRFSKALIMLCLTCIVLITQAQSQTWSLLQAPKEITLKLIRDPVTLSLASIDYGHIVHDNPFAIFAPSSISDISLLINFSNSLAIPITIAPRGQAHSVHGQAMTNHGVVVNMTELNGFRNGDGIVVVVDDTTIGPYADVGGEQIWIDVLHATLERGLTPLSWTDYLYLSVGGTLSNAGISGQTFRFGPQISNVHQLDVVTGKGDLVTCSAENNSELFYAVLGGLGQFGIITRARIALGPAPTRVKWLRLLYNDFSAFSGDQEHLISFNGINETNAADYVEGFLLQNQPPLDLSFYPEPDQPRITSLVTQYGIIYVIELVKYYDNSTQEHVDEDVKLLVERLKFFPTFMFEKDVSYEEFLNRVHADELFLRSQGLWDVPHPWLNLFVPASRISDFDEGVFKGIILQQNITAGLVIIYPMNRTKWDDNMSAVTPHDDVFYVVSFLRSTGFDKLEEFKAQNRQILQFCANAGMGIKQYLPQNKTREKWEEQFGPKWKTFKQRKAQFDPNRILSPGQGIFN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00515 522 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 246 521 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gma17g00515 522 Pfam FAD binding domain 68 214 IPR006094 GO:0050660
Gma17g00515 522 Gene3D - 48 521 IPR016167 -
Gma17g00515 522 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 8 522 - -
Gma17g00515 522 SUPERFAMILY FAD-linked oxidases, C-terminal domain 246 522 IPR016164 GO:0003824|GO:0050660
Gma17g00515 522 PANTHER GULONOLACTONE OXIDASE 8 522 - -
Gma17g00515 522 Gene3D - 248 480 IPR016170 -
Gma17g00515 522 Gene3D - 117 247 IPR016169 -
Gma17g00515 522 ProSiteProfiles PCMH-type FAD-binding domain profile. 62 245 IPR016166 GO:0071949
Gma17g00515 522 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 244 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00515 Gma-Chr17 4237023 4242413 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00515 K00279 - gmx:100808553 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00515 17 4237023 4242413 Gma17g00515 17 4237023 4242413 ECH
Gma17g00515 17 4237023 4242413 Gma13g00845 13 22723492 22728298 GST
Gma17g00515 17 4237023 4242413 Gma15g01589 15 15498640 15523081 PCT
Gma17g00515 17 4237023 4242413 Gma09g00577 09 6237357 6241217 PCT
Gma15g01589 15 15498640 15523081 Gma17g00515 17 4237023 4242413 PCT
Gma09g00577 09 6237357 6241217 Gma17g00515 17 4237023 4242413 PCT