Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00509 ATGACATGTTGTCACATTCCATTTTCGTTCTTCAAAATTTGTTCTTCCTTTGAACCCCTCAAAGTCAAACCTGCTTCTATGGCGAGACTGCTTCGGAACACTTCCCTTCTCACACGCTCCCTATTCTTCCCTAAGGTCTTTAAACTAGGAATGATTGGCACTTCTCAGATTTTGAGCTTCTCGTCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGAGTTGGCCCTTCAGCAAGCTCTTGATCAGATCACTTCCGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGTTCTGTCTCACCAAAAAATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATGTAGCACTAGGAATTGGTGGTCTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAAAAGCAAGGAGGCTATTGTGTCTTTGTCGATGCCGAGCATGCCCTTGATAAGACACTGGCAGAGTCTATTGGTGTGAATACAACGAACTTGCTTCTCTCCCAACCTGATTGTGGTGAACAAGCACTAAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGAAAATTGAGCCATGCCTTGTCACTTTCTCAAACTATATTAATTTTTATAAACCAGGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCTACTGAAGTTACTTGTGGTGGGAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAAGAGAATAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCCGAGTTTGAGCTTCAATTTGGCAAAGGTATATGTAAAGAAACAGAGATTATAGACTTGAGCGTAAATCACAAACTCATCTCAAAGGCTGGTGCCATGTTTTACTATAACGAACATAGTTTCCGTGGTAAGGATGCCCTAAAGAATTTTCTGGCCGAGAATCGAAGTGCATTAGAAGAACTTGAAATGAAGCTCAGGGAGAAGCTTCTTAATGCTGAGACAGAAAAGATGCAAGAGTCGGATGTAATTAATGGATatgttaccgaagaaattgcaacagttgattctactaatgacaatgttacagaaaaaattgcaacagttgattctactgatgaAGAAGCTGCAGCTATTGTTGAAGCATGA 1380 0.4007 MTCCHIPFSFFKICSSFEPLKVKPASMARLLRNTSLLTRSLFFPKVFKLGMIGTSQILSFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDVALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQTILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVNHKLISKAGAMFYYNEHSFRGKDALKNFLAENRSALEELEMKLREKLLNAETEKMQESDVINGYVTEEIATVDSTNDNVTEKIATVDSTDEEAAAIVEA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00509 459 Pfam recA bacterial DNA recombination protein 86 349 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 PRINTS RecA protein signature 172 201 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 PRINTS RecA protein signature 206 235 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 PRINTS RecA protein signature 244 273 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 PRINTS RecA protein signature 292 320 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 PRINTS RecA protein signature 325 354 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 PRINTS RecA protein signature 378 395 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 PANTHER RECA 27 436 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 Hamap Protein RecA [recA]. 83 410 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 ProSiteProfiles RecA family profile 1. 114 273 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Gma17g00509 459 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 27 436 - -
Gma17g00509 459 TIGRFAM tigrfam_recA: protein RecA 83 405 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 CDD recA 82 409 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gma17g00509 459 Gene3D - 113 418 IPR027417 -
Gma17g00509 459 ProSitePatterns recA signature. 295 303 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Gma17g00509 459 SMART AAA_5 136 310 IPR003593 -
Gma17g00509 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 349 IPR027417 -
Gma17g00509 459 SUPERFAMILY RecA protein, C-terminal domain 352 406 IPR023400 -
Gma17g00509 459 Coils Coil 382 416 - -
Gma17g00509 459 ProSiteProfiles RecA family profile 2. 281 354 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00509 Gma-Chr17 4184067 4190296 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00509 K03553 - gmx:100781271 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00509 17 4184067 4190296 Gma17g00509 17 4184067 4190296 ECH
Gma17g00509 17 4184067 4190296 Gma13g00854 13 22793533 22800746 GST
Gma17g00509 17 4184067 4190296 Gma15g01596 15 15681937 15691750 PCT
Gma17g00509 17 4184067 4190296 Gma09g00583 09 6375694 6383104 PCT
Gma15g01596 15 15681937 15691750 Gma17g00509 17 4184067 4190296 PCT
Gma09g00583 09 6375694 6383104 Gma17g00509 17 4184067 4190296 PCT