Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00351 ATGGGGTCTCTGCCTCTGCAATTCAGCGGGCTCAAGTGCTCCCCACTCTCATCTTCTTCTCTCTTCTCCAAACCTTCTCTTTGGACCCAACAATCCCAAAAGCGCGTTTCAATTACCATTGCGAACTCAATAGCAATAGCCAATGCGCAGAACAAAGAGAGAGCGAGGCTTAAGAAACTCTTCGAAGAAGCCTACGAGAGATGCCGCAATGCTCCAATGGAAGGTGTTTCCTTCACCATCGAAGACTTCACTGCTGCTCTTGACAAGTACGACTTCGATTCTGAAGTTGGCGGCAAGATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATCACTGCAAAGTCTTCGGCATATTTGCCACTGCAAGAGGCGTGCATCCACAGGGTTAAGCATGTTGAAGAAGCAGGCTTAGTTCCTGGGTTCAAAGAGGAGTTTTTGATCATTGGTGAGAACTCAATAGATGATAGCTTGGTCTTGAGTTTAAGGTCTCTTCAGTTTGACCTTGCATGGGAACGTTGTAGACAGCTTCAAGCTGAAGATGTCACAGTCAAGGGTAAGATTGTGGGGGTGAACAAAGGTGGAGTGGTGGCTGAGTTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCTCAAATATCAACGAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGCAACCGCAAGGCCGTAGCTGGCAACCAGGCACAGCTAGGAATTGGATCAGTGGTCACTGGCTCTGTTCAAAGCCTGAAGCCATATGGTGCTTTCATTGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCAGACATGCTAAGGTTCCAGCCTGAGAGTGGATTGACTATCAGCGGTGATGGGATCCTGGGACCATTTACTTCAGACTTGCCTGAAGAGGGACTGGATTTGAGTGAGGTACCACCAGCTGAAGAATCATGA 1239 0.4689 MGSLPLQFSGLKCSPLSSSSLFSKPSLWTQQSQKRVSITIANSIAIANAQNKERARLKKLFEEAYERCRNAPMEGVSFTIEDFTAALDKYDFDSEVGGKIKGTVFYTDNNGAVVDITAKSSAYLPLQEACIHRVKHVEEAGLVPGFKEEFLIIGENSIDDSLVLSLRSLQFDLAWERCRQLQAEDVTVKGKIVGVNKGGVVAELEGLRGFVPLSQISTNSNVEELLDKELPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTISGDGILGPFTSDLPEEGLDLSEVPPAEES 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00351 412 MobiDBLite consensus disorder prediction 386 412 - -
Gma17g00351 412 CDD S1_RPS1_repeat_hs4 262 330 - -
Gma17g00351 412 Gene3D - 80 177 IPR012340 -
Gma17g00351 412 Coils Coil 347 367 - -
Gma17g00351 412 CDD S1_RPS1_repeat_ec2_hs2 185 249 - -
Gma17g00351 412 SUPERFAMILY Nucleic acid-binding proteins 261 340 IPR012340 -
Gma17g00351 412 SUPERFAMILY Nucleic acid-binding proteins 92 192 IPR012340 -
Gma17g00351 412 SMART S1_6 95 167 IPR022967 -
Gma17g00351 412 SMART S1_6 260 330 IPR022967 -
Gma17g00351 412 SMART S1_6 183 249 IPR022967 -
Gma17g00351 412 ProSiteProfiles S1 domain profile. 262 330 IPR003029 GO:0003676
Gma17g00351 412 SUPERFAMILY Nucleic acid-binding proteins 186 254 IPR012340 -
Gma17g00351 412 Coils Coil 47 67 - -
Gma17g00351 412 Gene3D - 257 334 IPR012340 -
Gma17g00351 412 ProSiteProfiles S1 domain profile. 97 167 IPR003029 GO:0003676
Gma17g00351 412 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 412 - -
Gma17g00351 412 ProSiteProfiles S1 domain profile. 185 249 IPR003029 GO:0003676
Gma17g00351 412 Pfam S1 RNA binding domain 184 247 IPR003029 GO:0003676
Gma17g00351 412 Pfam S1 RNA binding domain 261 330 IPR003029 GO:0003676
Gma17g00351 412 PANTHER 30S RIBOSOMAL PROTEIN S1 1 412 - -
Gma17g00351 412 Gene3D - 178 256 IPR012340 -
Gma17g00351 412 PRINTS Ribosomal protein S1 signature 97 115 IPR035104 -
Gma17g00351 412 PRINTS Ribosomal protein S1 signature 115 129 IPR035104 -
Gma17g00351 412 PRINTS Ribosomal protein S1 signature 188 204 IPR035104 -
Gma17g00351 412 PRINTS Ribosomal protein S1 signature 233 253 IPR035104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00351 Gma-Chr17 2839450 2843089 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00351 K02945 - gmx:100812847 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00351 17 2839450 2843089 Gma17g00351 17 2839450 2843089 ECH
Gma17g00351 17 2839450 2843089 Gma15g01270 15 11158496 11162735 PCT
Gma17g00351 17 2839450 2843089 Gma09g00289 09 2667277 2671845 PCT
Gma15g01270 15 11158496 11162735 Gma17g00351 17 2839450 2843089 PCT
Gma09g00289 09 2667277 2671845 Gma17g00351 17 2839450 2843089 PCT