Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01270 ATGCCGATGACGATGGCGATGACGGCGTCGCAGTTGCGGTGGGGGTGGAGACCGACGCCGAAGCAGCAGCAACGACGCCGTATGGTTCCGGTGGTGTGTTCCATCGCTATAAAGAACGCTCAGAACAAAGAGAGAGCGAAACTGAAGAAGCTCTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTTTCCTTCACTATCCAACAATTCACCGACGCTCTCGACAAGTACGACTTCGACGCCGAAATGGGCACCAAGGTTAAGGGCACTGTTTTTGCCACAGATAACAGCGGAGCTTATGTTGACATTACTGCTAAGTCCACGGCCTACTTGCCTCTGCATGAGGCTTGCATCCACAGAATTAAGAATGTGGAAGAAGCAGGCATAATTCCTGGCATGAGAGAGGAATTTATGATCATTGATGAGAATCAAGCGGATGATACCTTGATCTTGAGTTTGAGGTCTATCCAATATGACATTGCATGGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTTCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGCTAGGAATTGGATCAGTAGTCACTGGCTCTGTTCAAAGCATAAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGAAACTGTTCTTCAACCTGGTGATGTTCTGAAGGTGATGATCTTAAGTCATGACCGAGAGAGAGGACGAGTAAGTCTTTCCACAAAGAAGTTGGAACCCACGCCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATTGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGATTCCAGCCAGAGAGTGGATTAACTCTCAGTGGTGAAGGAATCTTAGGACCACTAGCTTCAGACTTGCCTCCAGAGGGAGTGGATCTGAGTGAGGTACCCCCAGCTGAAGATTCATGA 1212 0.4818 MPMTMAMTASQLRWGWRPTPKQQQRRRMVPVVCSIAIKNAQNKERAKLKKLFEEAYERCRTAPTEGVSFTIQQFTDALDKYDFDAEMGTKVKGTVFATDNSGAYVDITAKSTAYLPLHEACIHRIKNVEEAGIIPGMREEFMIIDENQADDTLILSLRSIQYDIAWERCRQLKAEDAVVKGKVINANKGGLVAQVEGLKGFVPFSQISSKSAGEELLEQVIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAFIDIGGISGLLHVSQISHDRITDIETVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGEGILGPLASDLPPEGVDLSEVPPAEDS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01270 403 Gene3D - 70 168 IPR012340 -
Gma15g01270 403 Gene3D - 169 247 IPR012340 -
Gma15g01270 403 ProSiteProfiles S1 domain profile. 253 321 IPR003029 GO:0003676
Gma15g01270 403 SUPERFAMILY Nucleic acid-binding proteins 172 244 IPR012340 -
Gma15g01270 403 SMART S1_6 174 240 IPR022967 -
Gma15g01270 403 SMART S1_6 86 158 IPR022967 -
Gma15g01270 403 SMART S1_6 251 321 IPR022967 -
Gma15g01270 403 Gene3D - 248 325 IPR012340 -
Gma15g01270 403 Pfam S1 RNA binding domain 174 240 IPR003029 GO:0003676
Gma15g01270 403 Pfam S1 RNA binding domain 86 158 IPR003029 GO:0003676
Gma15g01270 403 Pfam S1 RNA binding domain 252 321 IPR003029 GO:0003676
Gma15g01270 403 SUPERFAMILY Nucleic acid-binding proteins 77 183 IPR012340 -
Gma15g01270 403 Coils Coil 338 358 - -
Gma15g01270 403 CDD S1_RPS1_repeat_ec2_hs2 176 240 - -
Gma15g01270 403 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 24 403 - -
Gma15g01270 403 PRINTS Ribosomal protein S1 signature 88 106 IPR035104 -
Gma15g01270 403 PRINTS Ribosomal protein S1 signature 106 120 IPR035104 -
Gma15g01270 403 PRINTS Ribosomal protein S1 signature 179 195 IPR035104 -
Gma15g01270 403 PRINTS Ribosomal protein S1 signature 224 244 IPR035104 -
Gma15g01270 403 SUPERFAMILY Nucleic acid-binding proteins 247 327 IPR012340 -
Gma15g01270 403 CDD S1_RPS1_repeat_hs4 253 321 - -
Gma15g01270 403 ProSiteProfiles S1 domain profile. 88 158 IPR003029 GO:0003676
Gma15g01270 403 Coils Coil 38 58 - -
Gma15g01270 403 ProSiteProfiles S1 domain profile. 176 240 IPR003029 GO:0003676
Gma15g01270 403 PANTHER 30S RIBOSOMAL PROTEIN S1 24 403 - -
Gma15g01270 403 MobiDBLite consensus disorder prediction 375 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01270 Gma-Chr15 11158496 11162735 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01270 K02945 - gmx:100806905 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01270 15 11158496 11162735 Gma15g01270 15 11158496 11162735 ECH
Gma15g01270 15 11158496 11162735 Gma09g00289 09 2667277 2671845 GST
Gma17g00351 17 2839450 2843089 Gma15g01270 15 11158496 11162735 PCT
Gma15g01270 15 11158496 11162735 Gma17g00351 17 2839450 2843089 PCT