Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00289 ATGACGATGGCGATGACGGCGTCGCAGTTGCGGTGCGGTTGGGGGTGGAGGCCAACGCCGAATCAGCAGCAGCAACGACGTCGTATGGTTCCGGTGGTGTGTTCCATCGCTATAGAGAACGCGAAGAACAAAGAGAGAGCGAAACTGAAGAAGCTCTTCGATGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTTTCCTTCACTCTCCAACAATTCACCGACGCTCTCGACAAGTACGACTTCAACGCCGAAATGGGCACCAAGGTTAAGGGCACTGTTTTTGCCACGGATAACAATGGAGCTTATGTTGACATTACTGCTAAGTCCACGGCCTACTTGCCTCTGCATGAGGCTTGCATCCACAGAATTAAGAATGTGGAAGAAGCAGGCATAATTCCTGGCGTGAGAGAGGAATTTATGATCATTGATGAGAATCAAGCGGATGATACCTTGATCTTGAGTTTGAGGTCTATCCAATATGACATTGCGTGGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGAAATCAGCTGGAGAAGAACTTCTTGAGCATGTGATTCCTTTTAAGTTTGTAGAGGTGGATGAGGAACAGTCTAGACTTGTTCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGCTAGGAATTGGATCAGTAGTCACTGGTTCTGTTCAAAGCATAAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGAAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGACCGAGAGAGAGGAAGGGTAAGTCTTTCCACAAAGAAGTTGGAACCCACACCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATTGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGATTCCAGCCAGAGAGTGGATTAACTCTCAGCGGTGAAGGAATCTTAGGACCACTAACTTCAGACTTGCCTCCAGAGGGAGTGGATCTGAGTGAGGTTCCCCCAGCTGAAGATTCGTGA 1215 0.4782 MTMAMTASQLRCGWGWRPTPNQQQQRRRMVPVVCSIAIENAKNKERAKLKKLFDEAYERCRTAPTEGVSFTLQQFTDALDKYDFNAEMGTKVKGTVFATDNNGAYVDITAKSTAYLPLHEACIHRIKNVEEAGIIPGVREEFMIIDENQADDTLILSLRSIQYDIAWERCRQLKAEDAVVKGKVVNANKGGLVAQVEGLKGFVPFSQISSKSAGEELLEHVIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAFIDIGGISGLLHVSQISHDRITDIETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGEGILGPLTSDLPPEGVDLSEVPPAEDS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00289 404 ProSiteProfiles S1 domain profile. 89 159 IPR003029 GO:0003676
Gma09g00289 404 SUPERFAMILY Nucleic acid-binding proteins 173 245 IPR012340 -
Gma09g00289 404 CDD S1_RPS1_repeat_hs4 254 322 - -
Gma09g00289 404 Coils Coil 339 359 - -
Gma09g00289 404 SMART S1_6 87 159 IPR022967 -
Gma09g00289 404 SMART S1_6 175 241 IPR022967 -
Gma09g00289 404 SMART S1_6 252 322 IPR022967 -
Gma09g00289 404 SUPERFAMILY Nucleic acid-binding proteins 81 184 IPR012340 -
Gma09g00289 404 CDD S1_RPS1_repeat_ec2_hs2 177 241 - -
Gma09g00289 404 PANTHER 30S RIBOSOMAL PROTEIN S1 25 404 - -
Gma09g00289 404 ProSiteProfiles S1 domain profile. 254 322 IPR003029 GO:0003676
Gma09g00289 404 Gene3D - 251 330 IPR012340 -
Gma09g00289 404 ProSiteProfiles S1 domain profile. 177 241 IPR003029 GO:0003676
Gma09g00289 404 Gene3D - 72 169 IPR012340 -
Gma09g00289 404 Pfam S1 RNA binding domain 87 158 IPR003029 GO:0003676
Gma09g00289 404 Pfam S1 RNA binding domain 253 322 IPR003029 GO:0003676
Gma09g00289 404 Pfam S1 RNA binding domain 175 241 IPR003029 GO:0003676
Gma09g00289 404 SUPERFAMILY Nucleic acid-binding proteins 253 332 IPR012340 -
Gma09g00289 404 MobiDBLite consensus disorder prediction 376 404 - -
Gma09g00289 404 CDD S1_RPS1_repeat_ec1_hs1 89 159 - -
Gma09g00289 404 PRINTS Ribosomal protein S1 signature 89 107 IPR035104 -
Gma09g00289 404 PRINTS Ribosomal protein S1 signature 107 121 IPR035104 -
Gma09g00289 404 PRINTS Ribosomal protein S1 signature 180 196 IPR035104 -
Gma09g00289 404 PRINTS Ribosomal protein S1 signature 225 245 IPR035104 -
Gma09g00289 404 Gene3D - 170 250 IPR012340 -
Gma09g00289 404 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 25 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00289 Gma-Chr9 2667277 2671845 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00289 K02945 - gmx:100810511 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00289 09 2667277 2671845 Gma09g00289 09 2667277 2671845 ECH
Gma15g01270 15 11158496 11162735 Gma09g00289 09 2667277 2671845 GST
Gma17g00351 17 2839450 2843089 Gma09g00289 09 2667277 2671845 PCT
Gma09g00289 09 2667277 2671845 Gma17g00351 17 2839450 2843089 PCT