Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00350 ATGTTCTTCAGCGGCGATCCTTTTACACGGAAGCGTGTCGATTTGGGAGGTCGAAGTTCAAAGGAAAGGGACCGGAAAAACCTGTTAGAACAAACACGAGTTGAGCGCAACCGGCGCTTATGGTTGCGCCAGCAGAACTCTGCTGTACTCAAAATTCAGAAATGCTTCAGAGGGAGAAAAGCTGTCAGAACTGAACAATCCAAGTTGCGAGAGCAGTTCTATAAAATCTATGGGAAGTATTGCCAGAATGTGGACAGGAATTCTTTTGGTCCAGATTCTAATTTCCTCTGCCAGTTCCTCTATTTCTTTAAGGCAGAAAATATTGAGGACTTCTTAGTTCTTGTGCAAATATGCCGGTTGCTTTGGTGGTCTGTTCAGGATAATGGGGATGTTGTCAAACTTTTTGCGGGGGTGGATTATTCATCCACACGGGCTTTGGTGAACTACCGAGTGAAGCTATTTGTACAAGCTTGTATTTGTGCTCTGCATCAGAATAGAAATCAGTTAAAAGATCAGCTTTTATTGACTCCTGAGGAATTGAATGTGTCAGCTATTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATCCCAAATTGCCATGGAGCTGTAACCTAGTACAATATCTCATTCAAAACAATGGAGTTGGCCTACTCAGAGAGATAGTTCTTACTGGAAAGGATAATGCAGAAAATTGTTTTTCCATTGGCAAGGGATCATCATTGGAGCGTGTGCTTATTGCTGTAATATCTCATGTTGGTCAGAAGCCATGTATCTGTTCACATATTAATCCAAGATATAGCTCTGCATCACAGATCATCACAATTCCTTTCTTGTGGCATCTCTTCCCAAATTTACAACAGATTTTTGCAGCAAACAACCTGAATCAATGTTACATTCATCAAATGGCAAAGTTTGGGCAAAATCTGATCAAGTTGCTACCTAAGGATATATCAAATGAATTTCCGAGCCATGCGTGTATGCTTGGAAATGTATTAGAAACTGCTGGAATTGCTTTGTCTCATCCTAACTGTTCATTTGATATGGCCGTAGACCTTGTTGCTGTCACTACGTTTTTGCTGGAGGCACTCCCATCTCTGAAAACTTCCAATAGTAGAGAAAGCTCTGTGATTGCTAAGGATGATATGATTGAAGACGATGAAGTCATGGAAATAGCTTTAGATAGTAAATTGGAGCAGCAAATTTATAATGCCATAAATCCTCGCTTCCTTCTGCAACTGACAAATATACTATTTAAAGAGATTTCATCTGTCAATGGCTCAGATTATGGACCCAATGATAGAGATGTTACAGCTGTTGATGGGGTTTGTGGGTTTTTGAATGTTACCTTCAACAAGCTGCCACTTGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTCCAACACTTTGGAATTTTATGAAGCAGTGTCATGAGAACCAAAAATGGTCATCACACCTCTCAAATGATGCACCTGGTTGGCTGTTACCTCTTGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTCGATAATGAAGAATTTTATGAGCAAGAGAAACCGCTATCACTGAAGGACATTAGAAGCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATATCACATCTGCTAATTCGGTAAAATCTGTTCCAGTTAGTTCAGCTAGTAAGGGGCAGTCTGTTCAGACCATTCAACAGAGGGTTTGCATTGTAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCCCAGTAACTTCCATGCTGATGGGGTGAATGACTTATTTAGCTCTCAGGCTGTAATAGAAAACACACGAGCAAATGAAATTTTGAAACAGGCCCCTTTCTTGATACCATTTACAAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGACCTCAAGCTGTATTTTCTAGAAATCGATTCAGGATACAACGAGATCATATTTTGGAAGATGCTTACAATCAAATGAGTCAGTTGACAGAAGATAGTCTTCGAGGATCGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGTGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAATATGGATTATTTAAGGAAACAGCGGATCACCTGCTTTATCCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTCGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTTTTCTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCCGGAGGAAGGAACCTACGTGTCACTAATGAGAATGTCATTACTTTTATCCACCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATGCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATATTGATGATCTGCGGCTGCATACCAACTATGCAGGAGGCTATCATAATGAGCATTTTGTTATGGAGATGTTTTGGGAAGTTCTCAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCTCGTGGGCCTTTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGGGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAGCAAGGAGCAATTGGAAACCAAATTACTGTATGCCATAAATGCTGATGCTGGCTTTGATTTAAGTTAA 3081 0.4012 MFFSGDPFTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLKIQKCFRGRKAVRTEQSKLREQFYKIYGKYCQNVDRNSFGPDSNFLCQFLYFFKAENIEDFLVLVQICRLLWWSVQDNGDVVKLFAGVDYSSTRALVNYRVKLFVQACICALHQNRNQLKDQLLLTPEELNVSAIPLLEVLVLLIDPKLPWSCNLVQYLIQNNGVGLLREIVLTGKDNAENCFSIGKGSSLERVLIAVISHVGQKPCICSHINPRYSSASQIITIPFLWHLFPNLQQIFAANNLNQCYIHQMAKFGQNLIKLLPKDISNEFPSHACMLGNVLETAGIALSHPNCSFDMAVDLVAVTTFLLEALPSLKTSNSRESSVIAKDDMIEDDEVMEIALDSKLEQQIYNAINPRFLLQLTNILFKEISSVNGSDYGPNDRDVTAVDGVCGFLNVTFNKLPLERIMTVLAYRTELVPTLWNFMKQCHENQKWSSHLSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNHITSANSVKSVPVSSASKGQSVQTIQQRVCIVVSELLSQLQDWNNRRQFTSPSNFHADGVNDLFSSQAVIENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGPQAVFSRNRFRIQRDHILEDAYNQMSQLTEDSLRGSIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLMQKDWIDMFNEHELQLLISGSLDSLDIDDLRLHTNYAGGYHNEHFVMEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPMFCIQRASGNAVEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00350 1026 CDD HECTc 664 1024 IPR000569 GO:0004842
Gma17g00350 1026 PANTHER BNAC01G43970D PROTEIN 1 1026 - -
Gma17g00350 1026 Gene3D Hect, E3 ligase catalytic domain 908 1025 - -
Gma17g00350 1026 Gene3D Hect, E3 ligase catalytic domain 790 869 - -
Gma17g00350 1026 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1026 IPR044611 GO:0000209|GO:0061630
Gma17g00350 1026 Pfam HECT-domain (ubiquitin-transferase) 721 1026 IPR000569 GO:0004842
Gma17g00350 1026 SMART hect_3 683 1026 IPR000569 GO:0004842
Gma17g00350 1026 Gene3D Hect, E3 ligase catalytic domains 666 904 - -
Gma17g00350 1026 SUPERFAMILY Hect, E3 ligase catalytic domain 654 1018 IPR035983 GO:0004842
Gma17g00350 1026 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Gma17g00350 1026 ProSiteProfiles HECT domain profile. 685 1026 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00350 Gma-Chr17 2820269 2838604 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00350 K10589 - gmx:100776303 2034.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00350 17 2820269 2838604 Gma17g00350 17 2820269 2838604 ECH
Gma17g00350 17 2820269 2838604 Gma15g01272 15 11182112 11217543 PCT
Gma17g00350 17 2820269 2838604 Gma09g00291 09 2688073 2691442 PCT
Gma15g01272 15 11182112 11217543 Gma17g00350 17 2820269 2838604 PCT
Gma09g00291 09 2688073 2691442 Gma17g00350 17 2820269 2838604 PCT