Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01272 ATGTTCTTCAGCGGCGATTCCTCCACTCGTAAGCGCGTTGATTTAGGTGGCCGCAGCTCGAAGGAACGGGACAGGAATAATCTCCTGGAGCAGACGCGGTTGGAGCGGAACCGGCGCATGTGGTTGCGCCAGCAGAACTCTGCTGCCCTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACAGAACAATCTAAACTACGAGAGAAATTCCTTAGTATCTATGGCAAAAACTGCCAGAATTTAGACAGGAATGCTTATGCTCCAGGTTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTTTAATTCTTGTGCAAATTTGCCGAATGCTTCAACGGTTTGTTCAAGACAGTGGGGATGTTGTGAGACTTTTTGCTGGTGTGGATTACTCATCCACGTGTGCTTTGGTGAACTACCGAGTGAAGCAATTTGTATATACTTGTATTTGTGCTGTACATCAGAATAGGAATAAGTTGAAGGATCAGCTTTTATTGACTCCAAAGGATTTTAATGCATCAGCTATTCCTTTATTGGAAATCTTAGTATTGTTGATAGATCCCAAACTGCCATGGAGCTGTAAGACAGTAGTATCTCTATCTCAAAACAATGCATTTGGTCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAGGGATCATCATTGGAGTGTGTGCTTACTGTTGTAATGTGTCACATCGGTCAGAAGCCATGTATCTGTTCACATACTGATCCACTATATAGCTTCTCATCACAGATTCTTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAAGCAGGTATTTGCAAAACAGGGCCTGAGCCAACATTACGTTCATCAGATGGCAACATGGGTGCCAAATCTGATTAGTTCTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGATTTGCTTTGTCTCGACCTGACTGTTCCTTTGATATGGCCATAGACCTTGCTGCTGTTATTACATTTTTGCTGGAATCACACCCATCTCTAACAAGATCTGATGGTAGAGAGAGTTCTTCTATTGCTGAGGATGAAATGACTGGCGAAGATGAAGTCATGGAAGTAGCTTTGGATAGGAAATTGAATCAACAAATTTGCAATGCCATAGATACTCGCTTCCTTTTGCAACTGACAAATATATTATTTGGAGATTTTTCATCTGCCAATAGTTCAGATCATGAGCCAGATGACAAGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTCAATACTTTGCCACTCGAAAAGATTATGACTGTGCTTGCCTACCGAACTGAACTTGTTCCTATACTTTGGAATTTTATGAAACGGTGCCATGAGAATGAAAAATGGTCATCTTTGTCTGAACGGTTATCATACCTCTCAGGTGATGCACCTGGTTGGCTGTTGCCTCTTGCTGTATTCTGTCCTGTCTACAAGCACATGCTCATGATAGTTGATAATGAAGAATATTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGAAGCCTTATCATTCTGTTAAGGCAGGCTCTGTGGCAGCTAATGTGGGTGAATCATACCACGTCTGCTAATTCAGTAAAATCTGTTCCAGTTAGCCCAGCTATTAAAAAGCAGTCGGAAGCGATTCAACAGAGGGTTAGCATTGTAGTGTCAGAGCTTCTGTCCCAGCTGCAAGATTGGAACAACAGACGACAATTTACATCCCCTACTGACTTCCATGCTGATGGGGTGAATGACTTCTTTATCTCACAGGCTGTTATGGAAAATACACAAGCAAATGAAATTTTGAAGCAGGCTGCTTTCTTGATACCATTTACTAGCAGGGTTAAAATTTTGACTTCTCAACTAGCTGCTGCAAGGCAAAGACATGGGTCTCAGGCTGTTTATACTAGAAACCGGTTCAGAATACGGCGGAATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGATGACCTTCGAGGATTGATTCGTGTGGCTTTTGTCAATGAATTGGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATTACCTGCTTTATCCCAATCCTGGATCAGGAATGATACATGAACAACATCTCCAATTTTTCCATTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCTTTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCCTGGACCCAGAATTATATCGTCATCTTATCTTTCTAAAGCATTATGAGCGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACCTTCGTGTCACCAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCAGCATACAAACTATGCAGGAGGTTATCATAGTGACCATCATGTTATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTAGAAAACAAGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCGCGGGGACCATTGCTTGGATTCCAATATCTTGAACCTTTGTTTTGCATCCAAAGGGCTGGTAGTAATGATCCAGACGAAGCTCTTGATCGATTACCTACATCAGCTACTTGCATGAACTTACTAAAGCTTCCACCTTATAAAAGTAAAGAGCAGCTGGAAACCAAATTACTCTATGCCATAAACGCTGATGCTGGCTTTGATTTGAGTTAA 3096 0.4031 MFFSGDSSTRKRVDLGGRSSKERDRNNLLEQTRLERNRRMWLRQQNSAALRIQKCFRGRKVVRTEQSKLREKFLSIYGKNCQNLDRNAYAPGSDFLRQFLYFFNAENIDDFLILVQICRMLQRFVQDSGDVVRLFAGVDYSSTCALVNYRVKQFVYTCICAVHQNRNKLKDQLLLTPKDFNASAIPLLEILVLLIDPKLPWSCKTVVSLSQNNAFGLLREIILTGKDNAENCIYSEKGSSLECVLTVVMCHIGQKPCICSHTDPLYSFSSQILTIPFLWHVFPNLKQVFAKQGLSQHYVHQMATWVPNLISSLPKDISDEFPTYACLLGNILETGGFALSRPDCSFDMAIDLAAVITFLLESHPSLTRSDGRESSSIAEDEMTGEDEVMEVALDRKLNQQICNAIDTRFLLQLTNILFGDFSSANSSDHEPDDKEVAAVGAVCGFLYVIFNTLPLEKIMTVLAYRTELVPILWNFMKRCHENEKWSSLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLRQALWQLMWVNHTTSANSVKSVPVSPAIKKQSEAIQQRVSIVVSELLSQLQDWNNRRQFTSPTDFHADGVNDFFISQAVMENTQANEILKQAAFLIPFTSRVKILTSQLAAARQRHGSQAVYTRNRFRIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADYLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYERDISELELYFVIVNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGGYHSDHHVIEMFWEVLKGFSLENKKKFLKFVTGCSRGPLLGFQYLEPLFCIQRAGSNDPDEALDRLPTSATCMNLLKLPPYKSKEQLETKLLYAINADAGFDLS 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01272 1031 Gene3D Hect, E3 ligase catalytic domain 913 1030 - -
Gma15g01272 1031 SUPERFAMILY Hect, E3 ligase catalytic domain 660 1023 IPR035983 GO:0004842
Gma15g01272 1031 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Gma15g01272 1031 PANTHER BNAC01G43970D PROTEIN 1 1031 - -
Gma15g01272 1031 SMART hect_3 688 1031 IPR000569 GO:0004842
Gma15g01272 1031 ProSiteProfiles HECT domain profile. 690 1031 IPR000569 GO:0004842
Gma15g01272 1031 MobiDBLite consensus disorder prediction 1 21 - -
Gma15g01272 1031 CDD HECTc 669 1029 IPR000569 GO:0004842
Gma15g01272 1031 Gene3D Hect, E3 ligase catalytic domains 671 909 - -
Gma15g01272 1031 Gene3D Hect, E3 ligase catalytic domain 795 874 - -
Gma15g01272 1031 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1031 IPR044611 GO:0000209|GO:0061630
Gma15g01272 1031 Pfam HECT-domain (ubiquitin-transferase) 726 1031 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01272 Gma-Chr15 11182112 11217543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01272 K10589 - gmx:100787467 2059.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01272 15 11182112 11217543 Gma15g01272 15 11182112 11217543 ECH
Gma15g01272 15 11182112 11217543 Gma09g00291 09 2688073 2691442 GST
Gma17g00350 17 2820269 2838604 Gma15g01272 15 11182112 11217543 PCT
Gma15g01272 15 11182112 11217543 Gma17g00350 17 2820269 2838604 PCT