Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00310 ATGGCCACTGGACAACTCTTCTCCCGTACTACACAAGCTTTGTTTTACAACTACAAGCAACTTCCTGTCCAGCGGATGCTTGACTTTGACTTTCTTTGTGGTGTAGAAACACCGTCAGTTGCTGGAATAATTAATCCTGGTTCTGAGGGATTTCAAAAGCTCTTTTTTGGTCAGGTGGAAATTGCCATTCCAGTTCATGCTGGTATTGAAGCAGCTTGTGCAGCACACCCCACTGCTGATGTGTTCATCAATTTTGCGTCATTTAGAAGTGCGTCTGCATCATCCATGGCTGCTTTGAAGCAGACAACAATTAGAGTTGTTGCTATTATTGCTGAAGGTGTACCGGAGTCAGACACTAAGCAACTTATAGCGTATGCTCGAGCAAACAGTAAGGTTGTTATTGGGCCAGCCACTGTTGGAGGAATTCAAGCTGGTGCTTTTAAGATAGGTGACACAGCTGGGACAATTGATAACATAATTCATTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTATACAACACTATTGCCCGTGTAACTGATGGAATTTATGAAGGCATTGCCATTGGTGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGGTGAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCGTGATGAGTATTCTCTAGTGGAAGCCCTAAAACAAGGGAAAGTGACTAAACCAGTTGTTGCCTGGGTTAGCGGAACCTGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCTAAAAGTGGTGGTGAGATGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAAAGAAGCTGGAGCTGTTGTTCCCACTTCATTTGAAGCTTTTGAAGACGCAATAAAGGAAACATTTGACAAATTGGTTCAAGAAGGGAACATCACACCTTTTAAAGAGTTTACTGCACCGCCAATCCCTGAGGACCTTAACACAGCAATTAGGAGTGGAAAAGTACGTGCTCCAACTCACATTATTTCCACCATCTCTGATGACAGAGGTGAGGAGCCATGCTATGCTGGTGTACCAATGTCTACCATTATTGAAAATGGTTATGGTGTGGGTGATGTAATCTCTCTTTTGTGGTTCAAACGCAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGTATCATGCTATGTGCTGACCATGGTCCTTGTGTCTCTGGTGCTCACAATTCTATAGTAACAGCAAGGGCTGGGAAGGACCTTGTCTCCTGTCTTGTTTCAGGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTATTTCAAGGATGCCTATGACAGGAGTCTTACACCTTATGAATTTGTTGAAAGTATGAAGAAGAAGGGCATCCGTGTTCCAGGAATAGGGCACAGGTAG 1470 0.4395 MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGVETPSVAGIINPGSEGFQKLFFGQVEIAIPVHAGIEAACAAHPTADVFINFASFRSASASSMAALKQTTIRVVAIIAEGVPESDTKQLIAYARANSKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALKEAGAVVPTSFEAFEDAIKETFDKLVQEGNITPFKEFTAPPIPEDLNTAIRSGKVRAPTHIISTISDDRGEEPCYAGVPMSTIIENGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNSIVTARAGKDLVSCLVSGLLTIGPRFGGAIDDAARYFKDAYDRSLTPYEFVESMKKKGIRVPGIGHR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00310 489 Gene3D Citrate Synthase, domain 1 396 484 IPR016142 -
Gma17g00310 489 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 489 - -
Gma17g00310 489 PRINTS Succinyl-CoA synthase signature 266 283 - -
Gma17g00310 489 PRINTS Succinyl-CoA synthase signature 96 113 - -
Gma17g00310 489 PRINTS Succinyl-CoA synthase signature 230 243 - -
Gma17g00310 489 PRINTS Succinyl-CoA synthase signature 199 217 - -
Gma17g00310 489 CDD CCL_ACL-C 369 489 - -
Gma17g00310 489 Pfam CoA-ligase 173 298 IPR005811 GO:0003824
Gma17g00310 489 Pfam Citrate synthase, C-terminal domain 399 489 IPR002020 GO:0046912
Gma17g00310 489 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Gma17g00310 489 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Gma17g00310 489 Gene3D - 2 137 - -
Gma17g00310 489 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Gma17g00310 489 Gene3D - 138 323 IPR016102 -
Gma17g00310 489 SUPERFAMILY Citrate synthase 130 489 IPR036969 GO:0046912
Gma17g00310 489 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Gma17g00310 489 PANTHER ATP-CITRATE SYNTHASE 1 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00310 Gma-Chr17 2495378 2499940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00310 1 489 Acyl Lipid Metabolism Gene Families AT5G49460 92.025 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00310 K01648 - gmx:100780205 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00310 17 2495378 2499940 Gma17g00310 17 2495378 2499940 ECH
Gma17g00310 17 2495378 2499940 Gma15g01308 15 11608411 11614512 PCT
Gma17g00310 17 2495378 2499940 Gma09g00320 09 3000489 3006580 PCT
Gma15g01308 15 11608411 11614512 Gma17g00310 17 2495378 2499940 PCT
Gma09g00320 09 3000489 3006580 Gma17g00310 17 2495378 2499940 PCT