Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01308 ATGGCCACCGGACAACTATTCTCCCGCACTACACAGGCTTTGTTTTACAACTATAAGCAACTTCCCATACAGCGGATGCTTGATTTTGACTTCCTTTGCGGCAGGGAAACACCATCAGTTGCTGGAATAATTAACCCTGGTTCTGAGGGATTTCAAAAACTTTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTTCATGCCACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAACTTTGCTTCATTTAGAAGTGCTGCAGCATCATCCATGGCAGCTTTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGAGTACCCGAGTCAGACACTAAGCAATTGATTGCATATGCCCGATCAAACAATAAGGTTGTTATTGGTCCAGCCACTGTTGGAGGCATTCAAGCAGGTGCTTTTAAAATTGGTGACACAGCTGGAACAATTGACAATATAATTCAGTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAACTCTACAACACTATTGCCCGTGTAACTGATGGGATTTATGAAGGCATTGCTATTGGAGGAGATGTTTTCCCTGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATGCCACAGGTTAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCGTGATGAGTATTCCTTAGTGGAGGCCTTAAAACAAGGAAAGGTATCCAAACCGGTTGTTGCCTGGGTCAGTGGCACATGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCAGGAGCCAAAAGTGGTGGTGAGTTAGAGTCTGCTCAAGCAAAGAATCAGGCACTAAGGGACGCTGGAGCTGTTGTTCCCACATCATATGAAGCTTTTGAAGCTGCAATTAGGGAAACATTTGATAAATTGGTTGAAGAAGGGAAGATCACACCAATCAAGGAAATCACACCTCCACCAATCCCTGAAGACCTTAGTACTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGACAGAGGAGAGGAGCCATGCTATGCTGGTGTACCCATGTCTTCCATTATCGAAAAAGGTTATGGTGTTGGTGATGTTATCTCTCTTTTGTGGTTTAAACGAAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGCATCATGCTATGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCAGGGAAAGACCTAGTTTCCAGTCTCGTATCAGGTTTGCTAACAATTGGTCCTCGATTTGGGGGTGCCATCGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGCACTTACTCCTTATGAGTTTGTTGAAGGTATGAAAAAGAAGGGAATTCGTGTGGCAGGAATAGGGCACAGGATCAAGAATAGGGACAACAAAGATAAGAGAGTTGAGCTGCTACAGAAGTTTGCACGAACACATTTTCCTTCCGTGAAATACATGGAATATGCTGTTCAAGTTGAGACCTACACACTCACAAAGGCAAATAATTTAGTTCTTAACGTAGATGGTGCAATTGGATCTCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAACAAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGCCTCTTTGTGCTGGCACGCTCCATTGGTCTGATTGGACACACCTTTGACCAAAAGCGATTGAAGCAACCACTTTACCGTCACCCATGGGAGGATGTTCTCTACACAAAGTGA 1827 0.439 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHATIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNMPQVKMMVVLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALRDAGAVVPTSYEAFEAAIRETFDKLVEEGKITPIKEITPPPIPEDLSTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRALTPYEFVEGMKKKGIRVAGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVETYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01308 608 Gene3D - 2 137 - -
Gma15g01308 608 PANTHER ATP-CITRATE SYNTHASE 1 608 - -
Gma15g01308 608 Pfam CoA-ligase 173 298 IPR005811 GO:0003824
Gma15g01308 608 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 608 - -
Gma15g01308 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Gma15g01308 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Gma15g01308 608 SUPERFAMILY Citrate synthase 130 604 IPR036969 GO:0046912
Gma15g01308 608 CDD CCL_ACL-C 369 606 - -
Gma15g01308 608 Gene3D - 450 547 IPR016143 -
Gma15g01308 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Gma15g01308 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Gma15g01308 608 Gene3D - 138 323 IPR016102 -
Gma15g01308 608 Pfam Citrate synthase, C-terminal domain 399 598 IPR002020 GO:0046912
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01308 Gma-Chr15 11608411 11614512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01308 1 608 Acyl Lipid Metabolism Gene Families AT3G06650 93.914 0.0 1151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01308 K01648 - gmx:100795745 1184.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01308 15 11608411 11614512 Gma15g01308 15 11608411 11614512 ECH
Gma15g01308 15 11608411 11614512 Gma09g00320 09 3000489 3006580 GST
Gma17g00310 17 2495378 2499940 Gma15g01308 15 11608411 11614512 PCT
Gma15g01308 15 11608411 11614512 Gma17g00310 17 2495378 2499940 PCT