Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00320 ATGGCAACCGGACAACTATTCTCGCGTACTACACAGGCTTTGTTTTACAACTACAAGCAACTTCCCATCCAGCGGATGCTTGATTTTGACTTCCTTTGCGGCAGGGAAACACCATCAGTTGCTGGAATAATTAACCCTGGTTCTGAGGGATTTCAAAAACTTTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTGCATGCTACCGTTGAAGCAGCTTGTGCTGCACATCCTACTGCCGATGTCTTCATCAACTTTGCTTCATTTAGAAGTGCTGCAGCATCATCCATGGCTGCTTTAAAACAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGAGTACCCGAGTCAGACACTAAGCAATTGATTGCATATGCCCGATCAAACAATAAGGTTGTTATTGGCCCAGCCACAGTTGGAGGCATTCAAGCAGGTGCTTTTAAAATTGGTGACACAGCTGGAACAATTGACAATATAATTCAGTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAACTATACAACACTATTGCCCGCGTAACTGATGGGATTTATGAAGGCATTGCTATTGGAGGAGATGTTTTCCCTGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATGCCACAGGTTAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCGTGATGAGTATTCCTTAGTGGAGGCCTTAAAACAAGGAAAAGTATCCAAACCGGTTGTTGCCTGGGTCAGTGGGACATGTGCACGACTATTCAAATCTGAAGTACAATTTGGTCATGCAGGAGCCAAAAGTGGTGGTGAGTTGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAGGGATGCTGGAGCTGTTGTTCCCACATCATATGAAGCTTTTGAAGTTTCAATTAAGGAAACATTTGATAAATTGGTTGAAGATGGGAAGATCACACCAATCAAGGAAATCACACCTCCACCAATCCCTGAGGACCTTAGTACTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGACAGAGGAGAGGAGCCATGCTATGCTGGTGTACCCATGTCTTCCATTATTGAAAAAGGTTATGGTGTTGGTGATGTTATCTCTCTTTTGTGGTTTAAACGAAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGCATCATGCTATGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCTGGGAAGGACCTAGTTTCTAGTCTTGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGCGCTTAGTCCTTATGAGTTTGTTGAAAGTATGAAGAAGAAGGGAATTCGTGTGCCAGGAATAGGGCACAGGATCAAGAATAGGGACAACAAAGATAAGAGAGTTGAGCTGCTACAGAAGTTTGCACGCACACATTTTCCTTCTGTGAAATACATGGAATATGCTGTTCAAGTTGAGACCTACACGCTCACAAAGGCAAATAATTTAGTTCTTAACGTAGATGGTGCAATTGGATCTCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAACAAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGCCTCTTTGTGCTGGCACGCTCCATTGGTCTGATTGGGCACACCTTTGACCAAAAGCGATTGAAGCAACCACTTTACCGTCACCCATGGGAGGATGTTCTCTACACAAAGTGA 1827 0.4373 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHATVEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNMPQVKMMVVLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALRDAGAVVPTSYEAFEVSIKETFDKLVEDGKITPIKEITPPPIPEDLSTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRALSPYEFVESMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVETYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00320 608 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 608 - -
Gma09g00320 608 Pfam CoA-ligase 173 298 IPR005811 GO:0003824
Gma09g00320 608 Gene3D - 138 323 IPR016102 -
Gma09g00320 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Gma09g00320 608 Gene3D Citrate Synthase, domain 1 400 598 IPR016142 -
Gma09g00320 608 CDD CCL_ACL-C 369 606 - -
Gma09g00320 608 Pfam Citrate synthase, C-terminal domain 399 598 IPR002020 GO:0046912
Gma09g00320 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Gma09g00320 608 SUPERFAMILY Citrate synthase 130 604 IPR036969 GO:0046912
Gma09g00320 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Gma09g00320 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Gma09g00320 608 Gene3D - 2 137 - -
Gma09g00320 608 Gene3D - 451 552 IPR016143 -
Gma09g00320 608 PANTHER ATP-CITRATE SYNTHASE 1 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00320 Gma-Chr9 3000489 3006580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00320 1 608 Acyl Lipid Metabolism Gene Families AT3G06650 93.586 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00320 K01648 - gmx:100800904 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00320 09 3000489 3006580 Gma09g00320 09 3000489 3006580 ECH
Gma15g01308 15 11608411 11614512 Gma09g00320 09 3000489 3006580 GST
Gma17g00310 17 2495378 2499940 Gma09g00320 09 3000489 3006580 PCT
Gma09g00320 09 3000489 3006580 Gma17g00310 17 2495378 2499940 PCT