Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00230 ATGTCAATGAGTGAGCGGAAGACTATTGACCTAGAACAGGGATGGGATTTCATGCAGAAGGGCATCACCAAGCTCAAGAACATTCTAGAAGGCTTGCCCGAGCCTCAATTCAGCTCCGAGGACTACATGATGCTTTACACGACCATCTACAACATGTGCACTCAAAAGCCTCCTCATGACTATTCCCAACAACTTTATGACAAGTATAAGGAGTCTTTTGAAGAGTACATCGTATCGACGGTATTGCCTTCTTTGAGAGAGAAGCACGATGAATTTATGTTGAGAGAACTTGTGAAGAGATGGGCGAACCATAAAATTATGGTTCGGTGGCTTTCTCGGTTCTTTCACTATTTGGATCGGTACTTTATTGCTCGGAGGTCACTTCCGCCCCTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGTTAGAGATGCAGTTATTTCACTTATTGATCAAGAACGGGAGGGAGAGCAGATTGATCGAGCTCTGTTAAAGAATGTATTAGACATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCCGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCGAATTGGATTCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGCTCATTACTTGCACTCTAGTAGCGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGTTGTTATCTGTGTATGCAAACCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGACAAGGTTGAAGACTTGTCAAGAATGTTCAGGCTATTCTCTAAAATACCTCGAGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTTACCACTGAAGGTATGGCTTTGGTGAAGCATGCTGAAGATGCAGCTAGCAACAAAAAGGCAGAGAAGAAGGATATCGTAGGTCTGCAGGAGCAGGTTTTTGTTCGCAAGGTGATTGAGCTGCATGACAAGTACCTGGCATATGTGAACGATTGTTTCCAGAATCATACTCTTTTCCACAAGGCTCTTAAAGAGGCTTTTGAGGTCTTTTGCAACAAAGGTGTTGCTGGAAGTTCAAGCGCAGAACTGCTTGCCTCCTTCTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTAAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTGGTCAAGCTGCTTGCCTATATTAGTGACAAAGACTTGTTTGCTGAATTTTATAGGAAGAAGCTTGCTCGAAGGCTTCTCTTTGACAAGAGTGCCAATGATGATCACGAGCGAAGTATTTTGACAAAATTGAAGCAACAATGTGGTGGACAGTTTACCTCAAAGATGGAAGGAATGGTTACAGATTTGACACTGGCAAAGGAGAATCAAACTAGCTTTGAGGAGTATTTAAGCAATAATCCCAATGCAGACCCTGGCATAGACTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCTGCAGAAATGATAAGGTGTGTTGAAGTTTTCAAAGAATTTTATCAAACTAAAACGAAGCACAGAAAACTTACATGGATTTATTCCTTGGGTACGTGTAATATAAGTGGGAAATTTGACCCAAAAACCGTGGAGCTGATTGTTACAACCTACCAGGCTTCAGCATTACTGCTTTTTAATTCGTCTGATAGACTGAGTTACTCAGAGATAATGACTCAGTTAAACTTATCTGACGATGATGTTATTAGACTGCTCCATTCCTTATCATGTGCCAAGTACAAGATTCTCAACAAGGAGCCAAATACAAAAACAATATTGTCCACTGATTATTTTGAATTTAATTCCAAATTTACTGACAAAATGAGGAGAATCAAGATTCCTCTTCCTCCTGTGGATGAGAAGAAAAAGGTTATTGAGGATGTTGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGTAAAGTTTTGGGCTACCAACAATTAGTCATGGAGTGTGTTGAGCAGTTAGGTCGCATGTTTAAGCCTGACGTCAAGGCTATTAAAAAGCGGATTGAAGATTTGATTTCTCGTGACTACTTGGAAAGAGACAAAGATAATGCTAATATGTTCAAGTACTTGGCTTGA 2235 0.4009 MSMSERKTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYKESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTTEGMALVKHAEDAASNKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLASFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFDPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILNKEPNTKTILSTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANMFKYLA 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00230 744 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Gma17g00230 744 Gene3D Cullin Repeats 142 264 - -
Gma17g00230 744 PANTHER CULLIN 2 743 IPR045093 -
Gma17g00230 744 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Gma17g00230 744 Gene3D - 661 744 IPR036388 -
Gma17g00230 744 SMART cul_2 420 569 IPR016158 -
Gma17g00230 744 Gene3D Cullin Repeats 3 141 - -
Gma17g00230 744 Coils Coil 322 342 - -
Gma17g00230 744 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Gma17g00230 744 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Gma17g00230 744 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Gma17g00230 744 Gene3D Cullin Repeats 390 503 - -
Gma17g00230 744 Pfam Cullin family 24 647 IPR001373 GO:0006511|GO:0031625
Gma17g00230 744 Gene3D Cullin Repeats 267 389 - -
Gma17g00230 744 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Gma17g00230 744 PANTHER CULLIN 3B 2 743 - -
Gma17g00230 744 SUPERFAMILY "Winged helix" DNA-binding domain 659 744 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00230 Gma-Chr17 1872013 1878871 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00230 K03347 - gmx:100793682 1483.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00230 17 1872013 1878871 Gma15g01436 15 12955178 12967944 PCT
Gma15g00884 15 7321816 7334226 Gma17g00230 17 1872013 1878871 PCT
Gma13g01927 13 34579465 34593629 Gma17g00230 17 1872013 1878871 PCT
Gma15g01436 15 12955178 12967944 Gma17g00230 17 1872013 1878871 PCT