Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01680 ATGTCGCGAATCTTCGGTAGATGGAAGAATGCGAAGGAAATGGCGTTGCTTTCGGGGTTCCTGCCACGTGGGCACCATCGAACCGGGTTCAATTTTTGCCCAATTTCGACCCACCTGAACATGGTCGCCGGCCACCGGCGGCGGGAGGCTCCGGTGGGGGTTCAGGAGCGGTACAAGTGGGACCGCGGCGGCTCGGACGACAACTCGACCCGGAAGATCCGGGCCGAGGCGAATTGCCCACGTTGCACCAAAGACATGAACCTTGTTTTCTCTAATCGCCACTTTCCCACCCCATCAAGTGAATCTGAATTGGGCGGTGGTGGCGGAGAAAAAGAAAAGGGTTACCAATCGGTGAACCTTTGCCCAAGTTGCAAAACTGCTTATTACTTTCGCCCTTATGACACTACACCTTTGCAAGGTACCTTTGTGGAGATTGGTAGGGTCACTAGTACTAAAAATAATGGTGTTAATGATTTAAGTGGTAAGGGGCATTCTCCTAGGAGGATCACACACGGGAAGGGTGGTGGCAAAGAGGGTGGTAGTAGTACTAGTAAGGGAGAGGAATTTTGGGGTAGGAGTAATAATAATGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGACTTACAATAGGGGCGCTGGCAGAGGTAATGGTAGTAATGGCGAGCCACCTGAGTCGTGGCCGCTGGCACCAGATGGTAGTAATGGGAATGGAAATGGATTGGCTGTACATACTCCTCCAGGCCCGCCTTTTCCACCTGGGATTAATGTTATCCGGGCTACGGGGCCACGGAATGGTGGATCGGGTGGTGGAGGTGGGGGCAAGGGCGAGAAGACTGCCTGGGGAGGGTCTAATTTGGGGAAGGATTTTCCCTCGCCGAAGGAGATCTGTAAGGGTCTTGACAAGTTTGTTATTGGCCAACAAAGAGCCAAGAAGGTGCTCTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCAGCCGCAGATTCAGGAGTTTCAGAAGTATTAGATGATGACGATAATGTGGAGCTAGAGAAAAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATATTGTATAAACTACTCACGGCAGCAGATTTTAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACGAAGAAGTCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGCATCCACGGGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCGGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAGCTGGTGGAATAACAGATTCTGCAGTAACATCATCTTTACTTGAGTCAGTGGAAAGCGCTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGATTCCCCATTTTAGTTAGCTTGTCAGCTTTAACTGAAGACCAACTTATGATGGTCCTCACTGAACCAAAAAATGCTCTTGGCAAGCAGTACAAGAAATTATTTAGCATGAACAATGTTAAGTTACACTTCACAGAGAAGGCTCTAAGACTGATAGCAAAAAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTCCTGGAAAACATTTTAACTGAAGCTATGTTTGAGATTCCTGATATTAAGACAGGAAGTGACCGAGTTGATGCAGTTGTTATCGATGAAGAGTCAGTAGGATCACTAACTGCTCCTGGATGTGGAGGGAAAATTCTTCGTGGAGATGGTGCTTTGGAGCAGTACCTTGCTAAGATGAAGGATTCAGCGGTGAATGTTGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTGA 2136 0.4583 MSRIFGRWKNAKEMALLSGFLPRGHHRTGFNFCPISTHLNMVAGHRRREAPVGVQERYKWDRGGSDDNSTRKIRAEANCPRCTKDMNLVFSNRHFPTPSSESELGGGGGEKEKGYQSVNLCPSCKTAYYFRPYDTTPLQGTFVEIGRVTSTKNNGVNDLSGKGHSPRRITHGKGGGKEGGSSTSKGEEFWGRSNNNASKWLEVSLWETLMTYNRGAGRGNGSNGEPPESWPLAPDGSNGNGNGLAVHTPPGPPFPPGINVIRATGPRNGGSGGGGGGKGEKTAWGGSNLGKDFPSPKEICKGLDKFVIGQQRAKKVLSVAVYNHYKRIYHATLQKGSAADSGVSEVLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVVTDATTLTQAGYVGEDVESILYKLLTAADFNVAAAQQGIIYIDEVDKITKKSKSLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGITDSAVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPDIKTGSDRVDAVVIDEESVGSLTAPGCGGKILRGDGALEQYLAKMKDSAVNVDVGESDLQEGDLELSSRAMSL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01680 711 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 43 710 - -
Gma16g01680 711 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 43 710 - -
Gma16g01680 711 Gene3D - 566 666 - -
Gma16g01680 711 Pfam AAA domain (Cdc48 subfamily) 356 560 IPR003959 GO:0005524|GO:0016887
Gma16g01680 711 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 290 658 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Gma16g01680 711 SMART AAA_5 356 518 IPR003593 -
Gma16g01680 711 MobiDBLite consensus disorder prediction 217 286 - -
Gma16g01680 711 CDD AAA 357 461 - -
Gma16g01680 711 Gene3D - 287 565 IPR027417 -
Gma16g01680 711 Pfam C-terminal, D2-small domain, of ClpB protein 567 636 IPR019489 -
Gma16g01680 711 MobiDBLite consensus disorder prediction 92 112 - -
Gma16g01680 711 MobiDBLite consensus disorder prediction 152 192 - -
Gma16g01680 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 651 IPR027417 -
Gma16g01680 711 SMART ClpB_D2_small_2 567 657 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01680 Gma-Chr16 37805587 37814024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01680 360 459 Miscellaneous Gene Families AT3G02450 37.624 2.08e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01680 K03544 - gmx:100805340 1353.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01680 16 37805587 37814024 Gma16g01680 16 37805587 37814024 ECH
Gma16g01680 16 37805587 37814024 Gma09g01483 09 39558032 39567127 GST
Gma16g01680 16 37805587 37814024 Gma10g01723 10 44412893 44417419 PCT
Gma10g01723 10 44412893 44417419 Gma16g01680 16 37805587 37814024 PCT